This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

• UpdatedNov 4, 2025

Official AFNI source and documentation

• UpdatedFeb 7, 2026
• C

fMRI Imaging Analysis

• UpdatedFeb 3, 2026
• Jupyter Notebook

Estimation, analysis and decomposition of brainwave spatiotemporal dynamics

• UpdatedJul 6, 2021
• MATLAB

Using computational tools to explore the networks underlying cognitive neuroscience

• UpdatedJan 16, 2020
• Jupyter Notebook

catchaMouse16: CAnonical Time-series CHaracteristics for Mouse fMRI

• UpdatedJul 15, 2025
• C

Neuroimaging analysis in Python

• UpdatedJan 20, 2026
• Python

Fully automatic technique for fetal brain segmentation using deep convolutional neural network

• UpdatedAug 5, 2018
• Jupyter Notebook

A toolbox for NIfTI and Analyze medical image visualization, editing, and 3D rendering

• UpdatedAug 30, 2020
• MATLAB

Semi-blind deconvolution for fMRI (BOLD signal)

• UpdatedApr 16, 2019
• Python

Kurs zu fMRT-Datenanalyse mit Python (Sommersemester 2019). Eigenständige Erstellung von MRT-Viewern und DIY-Analyse von fMRT-Zeitverläufen und Aktivierungskarten mit Python.

• UpdatedJul 8, 2019
• Jupyter Notebook

Materials for the "fMRI analysis" workshop at the Cognitive Neuroscience Skills Training In Cambridge-2023 (COGNESTIC-2023).

• UpdatedDec 18, 2024
• Jupyter Notebook

Functional connectivity analysis with the Desikan-Killiany Atlas

• UpdatedAug 21, 2024
• Python

Some pipelines implemented with nipype.

• UpdatedSep 28, 2021
• Jupyter Notebook

fMRI and omics viewer for quality control and data exploration

• UpdatedMay 22, 2024
• Jupyter Notebook

A standalone, plug-and-play software for population receptive field (pRF) mapping, designed for large-scale data analysis with high accuracy.

• UpdatedFeb 3, 2026
• Python

A docker image for deep learning in fMRI. GPU supported. Pytorch, Keras, Tensorflow, Nilearn, Pymc3

• UpdatedDec 27, 2023
• Dockerfile

This is a repository of MATLAB codes accompanying the paper "Non-linear functional co-activations: directed, dynamic, and delayed"

• UpdatedMay 6, 2022
• MATLAB

A GUI app made with python's tkinter for quickly computing fMRI activation maps

• UpdatedOct 19, 2019
• Python

This is the course project for CMPUT 652: Machine Learning and Brain grad. course taught at UofAlberta in Fall 2021.

• UpdatedApr 22, 2022
• Jupyter Notebook