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#

fine-mapping

Here are 26 public repositories matching this topic...

polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

  • UpdatedDec 9, 2024
  • Python

SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

  • UpdatedSep 1, 2023
  • R

Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF

  • UpdatedJan 16, 2024
  • R

A collection of modules to process and analyze IMGT-HLA sequences.

  • UpdatedDec 18, 2022
  • Parrot

Create LocusZoom-style plots in R.

  • UpdatedMar 5, 2023
  • R

Software to perform multi-ancestry SNP fine-mapping on molecular data

  • UpdatedOct 27, 2024
  • Python

user-friendly pipeline for GWAS fine-mapping

  • UpdatedMar 9, 2025
  • Python

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

  • UpdatedDec 23, 2024
  • JavaScript

Multple methods for BSA Pipeline

  • UpdatedDec 22, 2019
  • R

DeepGWAS: Enhance GWAS Signals for Neuropsychiatric Disorders via Deep Neural Network

  • UpdatedDec 22, 2024
  • R

echoverse module: Locus plot creation for fine-mapping and colocalization studies.

  • UpdatedOct 21, 2023
  • R

Shiny app for plotting and sharing fine-mapping results from echolocatoR

  • UpdatedApr 10, 2021
  • R

Find risk snp in the LD region of GWAS snps by convolutional neural network

  • UpdatedFeb 28, 2019
  • Python

MGflashfm: joint fine-mapping of genetic association signals in several traits amongst multiple population groups.

  • UpdatedJan 21, 2024
  • R

Flashfm: multi-trait fine-mapping that uses GWAS summary statistics from several traits. Updated and more flexible wrapper functions available at jennasimit.github.io/flashfmZero/

  • UpdatedJul 25, 2022
  • R

echoverse module: Annotate fine-mapping results

  • UpdatedOct 20, 2023
  • R

Generating a weighed average of LDSTORE matrices for locus-based fine-mapping.

  • UpdatedMar 19, 2021
  • R

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