SeqAn's official repository.

• UpdatedMar 14, 2025
• C++

NGLess: NGS with less work

• UpdatedMar 19, 2025
• Haskell

FastQC port to Qt5: A quality control tool for high throughput sequence data.

• UpdatedAug 4, 2020
• C++

Parse and process FASTA and FASTQ formatted files of biological sequences.

• UpdatedOct 22, 2024
• Julia

A secure encryption tool for genomic data

• UpdatedApr 14, 2024
• C++

Ultra Fast NGS Data QC Tool

• UpdatedFeb 14, 2021
• C++

Datastores for reads, not your papa's FASTQ files.

• UpdatedJul 28, 2023
• Julia

BioC++ Input/Output library

• UpdatedMay 12, 2023
• C++

fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data

• UpdatedJun 8, 2024
• C

Binary representation of fastq files

• UpdatedJul 10, 2019
• Go

A pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disordered

• UpdatedFeb 4, 2025
• Nextflow

FLiCK - Format LeveragIng Compression frameworK

• UpdatedDec 22, 2017
• Java

simple and convenient program to convert fasta sequences to fastq sequences

• UpdatedMay 13, 2020
• Shell

Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/, original code from@marta- , with some work done by@yoann-dufresne)

• UpdatedNov 16, 2017
• C

Hadoop Sequence Parser (HSP) library

• UpdatedJul 1, 2022
• Java

Lossless compression of FASTQ sequences.

• UpdatedSep 1, 2020
• C++

• UpdatedJun 22, 2022
• C#

• UpdatedOct 26, 2018
• Python

Set of tools to deal with sequences in FastQ format

• UpdatedMar 6, 2023
• Python

fdemux is a FASTA/FASTQ demultiplexer with support for (arbitrarily) fuzzy barcode matching, asymmetric barcoding, and parallel processing.

• UpdatedSep 11, 2018
• Python