A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

• UpdatedMar 14, 2025
• Go

Versatile open-source tool for microbiome analysis

• UpdatedMar 11, 2025
• C++

A Go package for engineering organisms.

• UpdatedOct 21, 2024
• Go

Renderers and renderer extensions for JupyterLab

• UpdatedFeb 20, 2025
• HTML

SeqAn's official repository.

• UpdatedMar 14, 2025
• C++

Efficient pythonic random access to fasta subsequences

• UpdatedOct 14, 2024
• Python

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

• UpdatedMar 16, 2025
• C++

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

• UpdatedJul 7, 2023
• Python

A Java API for high-throughput sequencing data (HTS) formats.

• UpdatedMar 13, 2025
• Java

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

• UpdatedDec 26, 2024
• C

Syntax highlighting for computational biology

• UpdatedMar 4, 2023
• Shell

Randomly subsample sequencing reads or alignments

• UpdatedNov 29, 2024
• Rust

A collection of scripts and notes related to genomics and bioinformatics

• UpdatedFeb 10, 2025
• R

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

• UpdatedMar 11, 2025
• Jupyter Notebook

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

• UpdatedFeb 27, 2025
• C

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

• UpdatedDec 15, 2023
• C++

A robust and fast clustering method for amplicon-based studies

• UpdatedMar 7, 2025
• C++

🚀 seqfu - Sequece Fastx Utilities

• UpdatedJan 20, 2025
• Nim

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

• UpdatedMar 3, 2025
• Perl

Software for prediction of plasmid sequences in metagenomic assemblies

• UpdatedJun 28, 2021
• Python