fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

• UpdatedJan 17, 2025
• Nim

🔅 State manager for deeply nested states

• UpdatedFeb 27, 2025
• TypeScript

A Tool to Annotate and Prioritize Exome Variants

• UpdatedMar 14, 2025
• Java

A comprehensive cancer DNA/RNA analysis and reporting pipeline

• UpdatedMar 17, 2025
• Nextflow

Exome/Capture/RNASeq Pipeline Implementation using snakemake

• UpdatedMar 26, 2018
• Python

Please consider using/contributing tohttps://github.com/nf-core/sarek

• UpdatedJan 3, 2019
• Nextflow

WES HLA Typing based on multiple alternative tools

• UpdatedMar 8, 2021
• Python

Target exome sequencing analysis for NYU NGS580 gene panel

• UpdatedSep 29, 2021
• Nextflow

• UpdatedMar 25, 2024
• HTML

eXome Hidden Markov model (XHMM) - Copy Number Variants (CNVs) from Whole Exome Sequencing Data

• UpdatedApr 26, 2017
• Shell

simple pipeline for processing exome sequencing data using BWA and GATK4

• UpdatedJul 7, 2020
• Shell

PCR primer design

• UpdatedJan 23, 2017
• Perl

• UpdatedFeb 4, 2022
• Python

MEM : Mendelian Error Method to rapidly detect deletions in whole exome and genome trio sequence data

• UpdatedMar 12, 2018
• Perl

Exome Slicer - Application to evaluate sequencing quality when designing an Exome Slice (NGS virtual panel)

• UpdatedOct 15, 2019
• Python

Monthly updated list of diagnostically relevant genes

• UpdatedNov 3, 2023
• R

Human Whole Exome Sequencing

• UpdatedSep 26, 2023
• HTML

Cloud based analysis for Doctors, Researchers, Bioinformaticians and Developers.

• UpdatedMar 25, 2024
• HTML

Codes for exome sequencing class being taught by Tychele N. Turner, Ph.D.

• UpdatedOct 9, 2017
• R

Variantes genéticas de amostras de Rattus norvegicus utilizando GATK4

• UpdatedFeb 24, 2021
• HTML