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epidemiology

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WorldHealthOrganization /app

COVID-19 App

dart firebase epidemiology appengine-java flutter coronavirus covid-19

UpdatedFeb 23, 2024
Dart

awesome-coronavirus

soroushchehresa /awesome-coronavirus

🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)

awesome corona awesome-list epidemiology 2019-ncov 2019ncov coronavirus coronavirus-info covid-19 covid19 sars-cov-2 covid19-data awesome-corona awesome-coronavirus

UpdatedMay 2, 2024
TypeScript

seirsplus

ryansmcgee /seirsplus

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

epidemiology epidemics epidemiology-analysis epidemic-model epidemic-simulations coronavirus covid-19 covid sars-cov-2

UpdatedMar 9, 2023
Python

DataForScience /Epidemiology101

Epidemic Modeling for Everyone

python blog medium modeling epidemiology covid-19

UpdatedApr 14, 2025
Jupyter Notebook

InstituteforDiseaseModeling /covasim

COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

simulation model abm stochastic epidemiology agent-based npi coronavirus covid-19 covid contact-tracing

UpdatedJul 1, 2025
Python

EpiModel

EpiModel /EpiModel

Mathematical Modeling of Infectious Disease Dynamics

network-graph agent-based-modeling epidemiology epidemics infectious-diseases

UpdatedApr 30, 2025
R

COVID-19-electronic-health-system /Corona-tracker

An easy-to-use PWA to monitor the user's wellness and learn about COVID-19.

react blockchain health public-health disease epidemiology symptoms blockstack pandemic patient-monitoring decentralized-applications coronavirus coronavirus-tracking covid-19 pandemic-disease-tracker

UpdatedJan 6, 2023
JavaScript

CodeForPhilly /chime

COVID-19 Hospital Impact Model for Epidemics

epidemiology epidemics code-for-america penn covid-19 code-for-philly

UpdatedMar 4, 2023
Python

CSSEGISandData /COVID-19_Unified-Dataset

Unified COVID-19 Dataset

machine-learning global-health epidemiology infectious-diseases pandemic hydrometeorology coronavirus covid-19 sars-cov-2

UpdatedJun 11, 2023
R

Python-for-Epidemiologists

pzivich /Python-for-Epidemiologists

Tutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3

python tutorial epidemiology causal-inference

UpdatedNov 20, 2022
Jupyter Notebook

zEpid

pzivich /zEpid

Epidemiology analysis package

data-science tmle epidemiology odds-ratio g-formula risk-ratio ipw inverse-probability-weights epidemiology-analysis risk-difference aipw g-computation targeted-maximum-likelihood incidence-rate-ratio g-estimation

UpdatedMay 7, 2023
Python

Circuitscape /Circuitscape.jl

Algorithms from circuit theory to predict connectivity in heterogeneous landscapes

julia julia-language epidemiology sparse-linear-systems movement-ecology landscape-ecology circuit-analysis climate-change animal-movement forest-fire landscape-genetics

UpdatedApr 28, 2025
Julia

lindbrook /cholera

R Package for Analyzing John Snow's 1854 Cholera Map

r data-visualization public-health epidemiology voronoi datasets cholera voronoi-polygons john-snow triangulation-delaunay

UpdatedJul 18, 2025
R

dreji18 /Bio-Epidemiology-NER

Recognize bio-medical entities from a text corpus

nlp transformers epidemiology ner biomedical

UpdatedAug 11, 2023
Python

BioDynaMo /biodynamo

BioDynaMo is a high-performance and modular, agent-based simulation platform.

simulation cancer biology high-performance parallel neuroscience epidemiology agent-based large-scale modular-design agent-based-framework agent-based-modelling

UpdatedJul 10, 2025
C++

covid19-sir

lisphilar /covid19-sir

CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.

python data-science machine-learning big-data analysis python-library epidemiology sir-model epidemic-model epidemic-simulations coronavirus covid-19 covid covid19

UpdatedJul 12, 2025
Python

wxwx1993 /PM_COVID

Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis."

epidemiology air-pollution mortality covid-19

UpdatedNov 11, 2023
R

thoughtworks /epirust

An agent-based epidemiology simulation framework built in Rust

rust agent-based-modeling epidemiology agent-based-simulation

UpdatedFeb 1, 2024
Rust

IFRCGo /cbs

Red Cross: Community-Based Surveillance

surveillance redcross epidemiology non-profit community-project health-informatics

UpdatedApr 8, 2024
C#

EMOD-Hub /EMOD

Source files for building the IDM EMOD disease transmission model.

modeling idm stochastic epidemiology malaria hiv

UpdatedJun 10, 2025
C

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