Medical Concept Annotation Tool

• UpdatedJul 1, 2025
• Python

Code for "Graph Neural Network on Electronic Health Records for Predicting Alzheimer’s Disease"

• UpdatedSep 13, 2024
• Python

A customizable pipeline for data extraction from MIMIC-IV.

• UpdatedJan 6, 2024
• Jupyter Notebook

FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

• UpdatedJun 23, 2025
• Python

Patient2Vec: A Personalized Interpretable Deep Representation of the Longitudinal Electronic Health Record

• UpdatedNov 27, 2018
• Python

MedAlign is a clinician-generated dataset for instruction following with electronic medical records.

• UpdatedMay 17, 2025

FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algorithms.https://doi.org/10.1093/jamia/ocaa139

• UpdatedJun 25, 2025
• Jupyter Notebook

The official implementation of our paper "MoleRec: Combinatorial Drug Recommendation with Substructure-Aware Molecular Representation Learning" (TheWebConf 2023).

• UpdatedJun 8, 2023
• Python

An Open Source Hospital Management System

• UpdatedFeb 8, 2024
• JavaScript

Building data processing pipelines for documents processing with NLP using Apache NiFi and related services

• UpdatedJul 3, 2025
• Python

An artificial intelligence system for predicting the deterioration of COVID-19 patients in the emergency department

• UpdatedMay 16, 2021
• Jupyter Notebook

General tutorials for the setup and use of MedCAT.

• UpdatedMay 22, 2025
• HTML

Code for the paper: Multi-Label Clinical Time-Series Generation via Conditional GAN (IEEE TKDE)

• UpdatedJul 5, 2022
• Python

Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records

• UpdatedDec 27, 2022
• Python

[ICLR 2025] ACES: Automatic Cohort Extraction System for Event-Streams

• UpdatedJun 6, 2025
• Python

Library and CLI for randomly generating medical data like you might get out of an Electronic Health Records (EHR) system

• UpdatedJul 1, 2025
• C#

Prepare UK Biobank Electronic Health Record data for research

• UpdatedAug 31, 2022
• R

Four Year Project: Electronic Health Records using Blockchain

• UpdatedMar 19, 2021
• Dart

Training HuggingFace models on EHR data

• UpdatedJun 28, 2025
• Jupyter Notebook

[Python] Additional works on Edward Choi's medGAN (generative adversarial network for electronic health records). In particular: boosting the prediction score using dataset augmentation.

• UpdatedApr 20, 2023
• Jupyter Notebook