Official git repository for Biopython (originally converted from CVS)

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• Python

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

• UpdatedMar 10, 2025
• Python

Official code repository for GATK versions 4 and up

• UpdatedMar 16, 2025
• Java

Data intensive science for everyone.

• UpdatedMar 16, 2025
• Python

tools for working with genome variation graphs

• UpdatedMar 14, 2025
• C++

Python and C++ code for reading and writing genomics data.

• UpdatedDec 9, 2021
• C++

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

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• Python

A Go package for engineering organisms.

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• Go

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

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• Python

3d engine implementation in DNA code!

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Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

• UpdatedAug 12, 2024
• Jupyter Notebook

Efficient pythonic random access to fasta subsequences

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• Python

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

• UpdatedJan 6, 2025
• HTML

16,432 Free Yara rules created by

• UpdatedJun 1, 2019
• YARA

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

• UpdatedDec 14, 2024
• Shell

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

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• Python

A Java API for high-throughput sequencing data (HTS) formats.

• UpdatedMar 13, 2025
• Java

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

• UpdatedDec 26, 2024
• C

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

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• C++

a JavaScript DNA, RNA, and protein sequence viewer

• UpdatedDec 26, 2024
• TypeScript