deconvolution

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flatironinstitute /CaImAn

Star649

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

calcium-imaging motion-correction source-extraction deconvolution 2-photon cnmf

UpdatedMar 20, 2025
Python

moabitcoin /holy-edge

Star352

Holistically-Nested Edge Detection

tensorflow detection segmentation edge-detection deeplearning vgg16 deconvolution

UpdatedFeb 15, 2023
Python

digitalcytometry /ecotyper

Star197

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

tumor single-cell deconvolution bulk-rna-seq microenvironment

UpdatedMar 28, 2024
R

HelmchenLabSoftware /Cascade

Star135

Calibrated inference of spiking from calcium ΔF/F data using deep networks

deep-learning calcium-imaging deconvolution spike-detection two-photon

UpdatedMar 17, 2025
Jupyter Notebook

preritj /segmentation

Star101

Tensorflow implementation : U-net and FCN with global convolution

computer-vision tensorflow kaggle kaggle-competition classification autoencoder segmentation fcn upsampling unet semantic-segmentation fully-convolutional-networks deconvolution image-mask masking u-net global-convolution-network carvana large-kernels transpose-convolution

UpdatedMay 16, 2019
Python

harsh1795 /CNN-DICOM-Segmentation

Star94

DICOM Image Segmentation with CNNs in Tensorflow

python tensorflow jupyter-notebook cnn medical-imaging convolutional-neural-networks image-segmentation dicom-images deconvolution deconvnet head-ct-scans

UpdatedFeb 27, 2018
Jupyter Notebook

WeisongZhao /Sparse-SIM

Star84

Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3

image-processing microscopy super-resolution image-restoration deconvolution fluorescence-microscopy-imaging matlab-gui

UpdatedFeb 8, 2024
MATLAB

msacchi /SeismicLab

Star82

Matlab research tools to read, write and process seismic data

seismic reconstruction radon deconvolution seismic-waves seismic-processing mssa seismic-interpolation fx-filters fx-ssa fx-eigenimages

UpdatedMar 12, 2025
MATLAB

KevinMenden /scaden

Star76

Deep Learning based cell composition analysis with Scaden.

machine-learning bioinformatics rna-seq deep-learning deconvolution single-cell-rna-seq cell-composition-analysis

UpdatedNov 5, 2024
Python

csgwon /pytorch-deconvnet

Star64

Example of Deconvnet in PyTorch for VGG16

visualization deep-learning neural-network pytorch vgg16 deconvolution

UpdatedAug 30, 2017
Python

roflmaostc /DeconvOptim.jl

Star63

A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.

gpu julia image-processing microscopy deconvolution

UpdatedJan 16, 2025
Julia

unfoldtoolbox /unfold

Star60

A matlab EEG toolbox to perform overlap correction and non-linear & linear regression.

linear-regression overlap eeg eye-tracking splines event-related-potentials deconvolution rerp mass-univariate

UpdatedMar 13, 2025
MATLAB

Danko-Lab /TED

Star60

a fully Bayesian approach to deconvolve tumor microenvironment

scrna-seq deconvolution bulk-rna-seq tumor-cells stromal-cells expression-profile tumor-expression

UpdatedJun 20, 2022
R

NathanSkene /EWCE

Star56

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.

transcriptomics single-cell deconvolution single-cell-rna-seq

UpdatedFeb 14, 2025
R

Biomedical-Imaging-Group /DeconvolutionLab2

Star55

Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

algorithms microscopy 3d deconvolution images-plugins

UpdatedMar 9, 2019
Java

Lukeli0425 /Galaxy-Deconv

Star54

Official code for Galaxy Image Deconvolution for Weak Gravitational Lensing with Unrolled Plug-and-Play ADMM

computer-vision deep-learning astronomy image-processing galaxy deconvolution pytorch-implementation

UpdatedMar 20, 2025
Jupyter Notebook

unfoldtoolbox /Unfold.jl

Star51

Neuroimaging (EEG, fMRI, pupil ...) regression analysis in Julia

erp julia modeling overlap regression eeg splines event-related-potentials deconvolution mixed-models mass-univariate-modeling

UpdatedMar 22, 2025
Julia

compneuro-da /rsHRF

Star49

rsHRF: A Toolbox for Resting State HRF Deconvolution and Connectivity Analysis (MATLAB)

toolbox data-analysis deconvolution resting-state-fmri hemodynamic-response-function spm-plugin

UpdatedJun 25, 2024
MATLAB

VladKarpushin /motion_deblur

Star48

You will learn how to recover a motion blur image by Wiener filter

opencv deconvolution restoration wiener

UpdatedAug 20, 2018
MATLAB

elgw /deconwolf

Star45

Deconvolution of widefield microscopy images and generation of point spread functions

deconvolution point-spread-function richardson-lucy widefield-microscopy born-wolf-model scaled-heavy-ball vkfft

UpdatedMar 12, 2025
C

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