cpg-islands
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Takes output from DMRichR and performs statistical testing and visualization for CpG and genic annotation enrichments
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May 1, 2020 - R
CpG island prediction with Hidden Markov Models, Viterbi and Baum-Welch algorithm
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Sep 4, 2023 - Jupyter Notebook
CytoMeth tool compiles a set of open source software named in the Roche pipeline guidelines to perform SeqCap Epi data analysis.
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Apr 7, 2023 - R
A simple python script to find the amount of methylation after bisulfites sequencing from .fasta files
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Apr 9, 2021 - Python
A portfolio of the work done during COMP 260 during S17 at Wesleyan University
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May 16, 2017 - Python
A project in Bioinformatics 2: detecting CpG islands using Hidden Markov Model.
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Jan 15, 2023 - Jupyter Notebook
decoding, evaluating and learning HMMs from a bioinformatics perspective
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Jan 1, 2021 - Jupyter Notebook
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