comparative-genomics-studies

Here are 2 public repositories matching this topic...

Language:All

Filter by language

drostlab /orthologr

Genome wide orthology inference and dNdS estimation

r genomics species blast comparative-genomics proteome blast-searches orthology-inference comparative-genomics-studies sequence-alignments comparative dnds-estimation codon-alignment sequence-alignment biomartr entire-genomes orthologous-genes comparing-genomes genomics-studies retrieve-genomes

UpdatedSep 5, 2025
R

This repository provides an easy-to-use Python-based pipeline for reconstructing phylogenetic trees from whole bacterial genomes. It automates the process of identifying orthologous single-copy genes, aligning sequences, trimming alignments, and generating a concatenated supermatrix ready for phylogenetic analysis. The pipeline requires only .fasta

bioinformatics supermatrix phylogenetics comparative-genomics comparative-genomics-studies phylogeny whole-genome-sequencing whole-genome evolutionary-biology concatination bacterial-genomics