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clade

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nextstrain /nextclade

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

science research virus sequencing next-generation-sequencing dna rna influenza sequences strain nextstrain ncov coronavirus covid-19 covid covid19 sars-cov-2 neherlab clades clade

UpdatedMar 17, 2025
Rust

eliottBo /MLSTclassifier_cd

multi-locus sequence type clade classifier for Clostridioides difficile

classifier machine-learning bioinformatics tool microbiology mlst multi-locus-sequence-typing clade

UpdatedJun 28, 2024
Python

tkmanabat /SARS-CoV-2-Clade-Identifier

SARS-CoV-2 Clade identifier with SNP data using machine learning.

genomics phylogenetics sars-cov-2 clade bioninformatics single-nucleotide-polymorphisms

UpdatedJul 7, 2022
Jupyter Notebook

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