A Nextflow pipeline for evaluating assembly quality

• UpdatedMar 13, 2025
• Nextflow

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

• UpdatedMar 16, 2025
• Python

Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs

• UpdatedSep 18, 2019
• Python

A nextflow pipeline for polishing CLR assemblies

• UpdatedFeb 3, 2023
• Nextflow

A tool to filter BUSCO output into single-copy gene files for phylogenomics

• UpdatedJul 24, 2024
• Shell

scripts associated with yam genome assembly

• UpdatedMay 8, 2020
• Python

Making BUSCO HMMs useable in Anvi'o.

• UpdatedJul 27, 2018
• Shell

Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)

• UpdatedSep 13, 2022
• Perl

Building a fully automized pipeline for phylogenomic analyses based on the BUSCO toolkit

• UpdatedApr 12, 2023
• Perl

This pipeline helps to build a phylogenetic tree using the BUSCO results over a group of species/genomes/proteomes/transcriptomes.

• UpdatedOct 27, 2023
• Python

A pipeline to construct phylogenetic tree using BUSCOs

• UpdatedAug 16, 2018
• Python

Snakemake pipeline to construct species phylogenies using BUSCOs

• UpdatedMar 5, 2025
• Python

Create a SNAP model from BUSCO output

• UpdatedApr 14, 2022
• Perl

A comparative annotation toolkit (CAT) pipeline for 304 fly genomes.

• UpdatedAug 5, 2024
• Shell

Docker container for W2RAP based on CentOS

• UpdatedSep 20, 2018
• Dockerfile

phylogeny and collinearity aware assembly evaluation toolkit.

• UpdatedFeb 20, 2025
• Python

Run multiple metagenome filtering programs using Docker containers

• UpdatedAug 4, 2023
• Shell

Genome Annotation: Hands-on Training

• UpdatedMar 11, 2025
• R