brats-dataset

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himashi92 /VT-UNet

Star261

[MICCAI2022] This is an official PyTorch implementation for A Robust Volumetric Transformer for Accurate 3D Tumor Segmentation

deep-learning pytorch mri transformer segmentation semantic-segmentation tumor-segmentation pytorch-implementation brats-dataset vision-transformer 3d-medical-imaging-segmentation volumetric-transformer pure-transformer vtunet

UpdatedSep 11, 2023
Python

shalabh147 /Brain-Tumor-Segmentation-and-Survival-Prediction-using-Deep-Neural-Networks

Star170

Use of state of the art Convolutional neural network architectures including 3D UNet, 3D VNet and 2D UNets for Brain Tumor Segmentation and using segmented image features for Survival Prediction of patients through deep neural networks.

deep-neural-networks deep-learning medical-imaging segmentation dice-scores keras-tensorflow survival-models dice-coefficient brain-tumor-segmentation unet-3d cnn-segmentation vnet3d survival-prediction glioma mri-segmentation dice-loss brats-dataset aiformedicine unet-architecture

UpdatedJul 24, 2020
Jupyter Notebook

LightersWang /3DUNet-BraTS-PyTorch

Star69

PyTorch 3D U-Net implementation for Multimodal Brain Tumor Segmentation (BraTS 2021)

pytorch segmentation unet semantic-segmentation brain-tumor-segmentation mri-segmentation brats-dataset brats-challenge brats2021 brain-tumors

UpdatedNov 15, 2023
Python

HowieMa /lstm_multi_modal_UNet

Star59

[ICIVC 2019] "LSTM multi-modal UNet for Brain Tumor Segmentation"

medical-imaging lstm-cnn unet-pytorch multi-modal-imaging brats-dataset

UpdatedMar 14, 2020
Python

charan223 /Brain-Tumor-Segmentation-using-Topological-Loss

Star32

A Tensorflow Implementation of Brain Tumor Segmentation using Topological Loss

deep-learning topology tensorflow cnn segmentation fcn image-segmentation 3d-segmentation topology-validation losses brats brain-tumor-segmentation niftynet brats-dataset

UpdatedApr 17, 2019
Python

adhaka3 /Pyadiomics-based-glioma-grading

Star25

This is a complete guide on how to do Pyradiomics based feature extraction and then, build a model to calculate the grade of glioma.

random-forest xgboost pca logistic-regression image-fusion relief mrmr pyradiomics k-best-first brats2018 radiomics-feature-extraction brats-dataset

UpdatedMay 9, 2020
Jupyter Notebook

Jun-Jie-Shi /M2FTrans

Star20

[IEEE-JBHI'2024] M2FTrans: Modality-Masked Fusion Transformer for Incomplete Multi-Modality Brain Tumor Segmentation

transformer medical-image-segmentation pytorch-implementation brats-dataset missing-modalities

UpdatedOct 6, 2024
Python

mahsaama /ViT3D-BrainTumorSegmentation

Star20

Segmentation of Brain Tumors using Vision Transformer

transformers 3d attention-is-all-you-need brain-tumor-segmentation brats-dataset swin-transformer

UpdatedFeb 6, 2023
Python

FinnBehrendt /Conditioned-Diffusion-Models-UAD

Star16

Codebase for Conditioned Diffusion Models for Unsupervised Anomaly Detection

deep-learning unsupervised-learning anomaly-detection domain-adaptation mri-brain brats-dataset diffusion-models unsupervised-anomaly-detection conditioned-diffusion-models

UpdatedJan 23, 2025
Python

AHMEDSANA /Binary-Class-Brain-Tumor-Segmentation-Using-UNET

Star15

We segmented the Brain tumor using Brats dataset and as we know it is in 3D format we used the slicing method in which we slice the images in 2D form according to its 3 axis and then giving the model for training then combining waits to segment brain tumor. We used UNET model for our segmentation.

python deep-learning tensorflow keras pandas python3 segmentation brain nueral-networks u-net tumor-detection brain-tumor-segmentation tumor-segmentation brats2018 brats18 brain-tumor-classification brats-dataset brain-tumor-detection u-net-keras

UpdatedNov 15, 2024
Jupyter Notebook

PatrickSVM /Diffusion-Models-for-Brain-Tumor-MRI-Scans

Star12

Training of Noise-to-Image Diffusion Model on Multi-Channel Brain Tumor MRI Scans.

image-generation brats-dataset diffusion-models brats2020

UpdatedJan 12, 2023
Jupyter Notebook

blackbird71SR /Brain-Segmentation-and-Tumor-Detection

Star11

Modified VGG16 and UNetCNN based 4D Image Segmentation (Finalist - Smart India Hackathon 2019)

python gui django deep-learning medical-imaging image-classification convolutional-neural-networks image-segmentation vgg16 unet mrbrains18 brats-dataset brats-challenge

UpdatedAug 15, 2020
Python

tpopordanoska /calibration_and_bias

Star8

Codebase for "On the relationship between calibrated predictors and unbiased volume estimation" (MICCAI 2021).

deep-learning medical-imaging calibration bias volume-estimation brats-dataset miccai-2021

UpdatedAug 25, 2021
Python

HowieMa /BrainTumorSegmentation

Star8

Brain tumor segmentation for Brats15 datasets

segmentation unet brats-dataset 3d-u

UpdatedFeb 19, 2019
Python

AHMEDSANA /Four-class-Brain-tumor-segmentation

Star5

python deep-learning tensorflow python3 mri-images brats brain-tumor-segmentation unet-image-segmentation unet-keras tumor-segmentation brats2018 mri-segmentation unet-segmentation brats-dataset brain-tumor-detection braintumorsegmentation

UpdatedNov 15, 2024
Python

Dynamo13 /AW-Net

Star5

[ICCVw 2023] "AW-Net: A Novel Fully Connected Attention-based Medical Image Segmentation Model" by Debojyoti Pal, Tanushree Meena, Dwarikanath Mahapatra, and Sudipta Roy.

computer-vision tensorflow medical-imaging iccv rsna multimodal-deep-learning segmentation-models brats-dataset iccv2023