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bioinformatics-tool

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tseemann /abricate

🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

contigs genomic-regions bioinformatics-tool antimicrobial-resistance-genes virulence-genes

UpdatedJan 31, 2026
Perl

lightdock

lightdock /lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

bioinformatics chemistry structural-biology molecular-structures protein-structure artificial-intelligence dna protein proteomics docking peptides molecular-biology protein-design protein-protein-interaction swarm-intelligence structural-bioinformatics protein-dna-interactions bioinformatics-tool glowworm-swarm-optimization protein-docking

UpdatedSep 16, 2025
Python

sunduanchen /Scissor

Scissor package

data-mining single-cell-analysis bioinformatics-tool

UpdatedMay 10, 2024
C++

inab /trimal

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

trimming multiple-sequence-alignment bioinformatics-tool

UpdatedFeb 20, 2026
C++

JianYang-Lab /gsMap

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

gwas spatial-data statistical-genetics spatial-data-analysis bioinformatics-tool spatial-transcriptomics

UpdatedFeb 12, 2026
Python

KarchinLab /open-cravat

A modular annotation tool for genomic variants

javascript python bioinformatics genomics python3 bioinformatics-pipeline annotation-tool variant-annotations variant-annotation variant-analysis genomic-data-analysis bioinformatics-tool

UpdatedFeb 20, 2026
JavaScript

RNAlysis

GuyTeichman /RNAlysis

Analyze your RNA sequencing data without writing a single line of code

bioinformatics rna-seq gui-application bioinformatics-pipeline rnaseq transcriptomics rna-seq-analysis bioinformatics-analysis smallrna rna-seq-pipeline bioinformatics-tool smallrna-seq

UpdatedJun 4, 2025
Python

seqfu2

telatin /seqfu2

🚀 seqfu - Sequece Fastx Utilities

bioinformatics genomics ngs sequencing bioconda fasta fastq bioinformatics-tool

UpdatedJan 31, 2026
Nim

Superzchen /iLearnPlus

iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.

python machine-learning deep-learning prediction feature-selection sequence-analysis bioinformatics-tool automated-modelling biomedical-data-analytics

UpdatedApr 15, 2024
Python

avrabyt /YouTube-Tutorials

📹 Collection of my Youtube Tutorials over the years! Read, write, and share what you create ✨🎈

python google-spreadsheet python-programming openai machinelearning python-webapp google-sheet python-beginners bioinformatics-tool machinelearning-python streamlit openai-api streamlit-components openai-gpt3 streamlit-application streamlit-web-app bioinformatics-python langchain chatgpt3

UpdatedFeb 1, 2026
Python

bcgsc /RNA-Bloom

🌺 reference-free transcriptome assembly for short and long reads

rna-seq denovo-assembly single-cell-rna-seq bioinformatics-tool nanopore-sequencing bulk-rna-seq pacbio-sequencing

UpdatedJan 28, 2024
Java

imgag /ClinCNV

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

copy-number-variation bioinformatics-algorithms bioinformatics-tool

UpdatedSep 16, 2025
R

BioBlender21

PabloEnmanuelRamos /BioBlender21

Blender plugin to process biological data and molecular work.

python bioinformatics blender biology blender-addon bioinformatics-tool bioblender

UpdatedFeb 14, 2022
Python

rcedgar /reseek

Protein structure alignment and search algorithm

bioinformatics protein-structure computational-biology protein-sequences search-algorithm bioinformatics-algorithms bioinformatics-tool

UpdatedFeb 19, 2026
C++

chriscainx /mnnpy

An implementation of MNN (Mutual Nearest Neighbors) correct in python.

biological-data-analysis batch-effects single-cell-analysis bioinformatics-tool mnn-correct mutual-nearest-neighbor

UpdatedJan 9, 2023
Python

josiahseaman /FluentDNA

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

visualization bioinformatics sequencing liftover dna protein alignment fasta fluent ddv msa fasta-sequences bioinformatics-tool chain-alignment fluentdna

UpdatedJul 19, 2021
JavaScript

ShujiaHuang /geneview

Genomics data visualization in Python by using matplotlib.

visualization python bioinformatics data-visualization matplotlib plotting bioinformatics-tool genomics-data-visualization

UpdatedDec 27, 2023
Python

ncsa /NEAT

NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.

bioinformatics bioinformatics-tool

UpdatedFeb 20, 2026
Python

stitchr

JamieHeather /stitchr

Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

immunology tcr bioinformatics-tool

UpdatedAug 19, 2025
Python

bcgsc /tigmint

⛓ Correct misassemblies using linked AND long reads

bioinformatics genome-assembly genome-scaffolding 10xgenomics misassembly-correction linked-reads bioinformatics-tool

UpdatedFeb 4, 2026
Python

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