bioinformatics-pipeline
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Robust, flexible and resource-efficient pipelines using Go and the commandline
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Aug 14, 2024 - Go
A language and runtime for distributed, incremental data processing in the cloud
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Oct 18, 2023 - Go
Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.
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Dec 12, 2025 - Go
Rapid large-scale prokaryote pan genome analysis
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Nov 3, 2025 - Perl
Package for fetching metadata and downloading data from SRA/ENA/GEO
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Dec 9, 2025 - Python
Analysis Pipeline for Single Cell ATAC-seq
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Apr 27, 2023 - R
GCP for Bioinformatics Researchers
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May 29, 2025 - Jupyter Notebook
Finds SNP sites from a multi-FASTA alignment file
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Dec 16, 2020 - C
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
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Jun 15, 2024 - Java
A tool to circularize genome assemblies
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Apr 6, 2024 - Python
Whole Genome Sequencing analysis, WGS analysis
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Jul 5, 2023
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
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Aug 27, 2025 - Python
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
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Nov 23, 2025 - Python
Antimicrobial Resistance Identification By Assembly
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Oct 12, 2023 - Python
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
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Nov 22, 2025 - Python
ATAC-seq and DNase-seq processing pipeline
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Jun 21, 2022 - Python
NGLess: NGS with less work
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Mar 19, 2025 - Haskell
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
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May 20, 2023 - Python
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
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Nov 19, 2025 - Jupyter Notebook
A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GATK and Sentieon. 一个基于 GATK 和 Sentieon 的简易且全面的 WGS/WES 分析流程生成器.
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May 20, 2025 - Python
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