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bioinformatics-analysis

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BioContainers /containers

Bioinformatics containers

dockerfiles bioinformatics docker-image rkt bioinformatics-containers biocontainers-architecture bioinformatics-analysis

UpdatedOct 31, 2025
Dockerfile

kpatel427 /YouTubeTutorials

youtube bioinformatics rna-seq tutorials single-cell bioinformatics-analysis

UpdatedOct 1, 2024
R

lynnlangit /gcp-for-bioinformatics

GCP for Bioinformatics Researchers

google bioinformatics genomics nextflow gcp bioinformatics-pipeline bioinformatics-analysis bioinformatics-researchers google-batch

UpdatedMay 29, 2025
Jupyter Notebook

sumanismcse /Plant-Disease-Identification-using-CNN

Plant Disease Identification Using Convulutional Neural Network

python machine-learning bioinformatics tensorflow machine-learning-algorithms image-processing project cnn kaggle neural-networks machinelearning convolutional-neural-networks image-analysis neural neuralnetwork plant-disease final-year-project final-project bioinformatics-analysis paper-implementations

UpdatedSep 3, 2020
Python

RNAlysis

GuyTeichman /RNAlysis

Analyze your RNA sequencing data without writing a single line of code

bioinformatics rna-seq gui-application bioinformatics-pipeline rnaseq transcriptomics rna-seq-analysis bioinformatics-analysis smallrna rna-seq-pipeline bioinformatics-tool smallrna-seq

UpdatedJun 4, 2025
Python

HuffordLab /NAM-genomes

Detailed bioinformatics scripts and methods used in the NAM genome paper.

genomics genome-assembly bioinformatics-analysis bioinformatics-scripts nam maize

UpdatedJan 14, 2025
R

BU-ISCIII /iskylims

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

workflow lims ngs bioinformatics-analysis ngs-analysis ngs-data

UpdatedNov 19, 2025
Python

urmi-21 /pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

python bioinformatics rna-seq conda bioinformatics-pipeline bioconda bioinformatics-analysis rna-seq-pipeline ncbi-sra rna-seq-workflows

UpdatedJun 4, 2021
Python

twoXes /awesome-structural-bioinformatics

Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

machine-learning bioinformatics deep-learning genomics chemistry genetics cheminformatics biology protein-structure protein bioinformatics-pipeline quantum-chemistry awesome-list proteomics docking bioinformatics-analysis protein-structure-prediction genome-alignment alphafold molecular-informatics

UpdatedMay 5, 2023
Python

FunGeST /Palimpsest

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

visualization bioinformatics r genomics cancer-genomics clonality somatic-mutations nmf cancer-research bioinformatics-analysis structural-variation tumor-evolution mutational-signatures tumor-heterogeneity signature-extraction nmf-extraction structural-variant-signatures driver-events

UpdatedMay 23, 2024
R

BioJulia /GenomeGraphs.jl

A modern genomics framework for julia

bioinformatics genomics biology julia bio genome-sequencing genomes genome-assembly genome-graph bioinformatics-analysis

UpdatedJul 6, 2020
Julia

JhuangLab /BioInstaller

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

installer bioinformatics-analysis installer-script ngs-analysis

UpdatedJan 8, 2023
R

ebi-jdispatcher /webservice-clients

A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs

bioinformatics-analysis webservice-client bioinformatics-tool

UpdatedJul 25, 2024
Perl

xqwen /fastenloc

Colocalization analysis of genetic association signals

bioinformatics integrative-analysis bioinformatics-analysis colocalization genetic-association-analysis

UpdatedJun 13, 2025
C++

bobeobibo /phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

bioinformatics genomics bioinformatics-pipeline biological-data-analysis bioinformatics-analysis genomic-data-analysis phage genomic-regions bioinformatics-tool phages prophage

UpdatedJan 8, 2024
HTML

BioContainers /specs

BioContainers specifications

docker bioinformatics specifications rkt biocontainers-specification biocontainers bioinformatics-containers biocontainers-architecture bioinformatics-analysis

UpdatedMar 1, 2023

uc-bd2k /GREIN

GREIN : GEO RNA-seq Experiments Interactive Navigator

processing rna-seq r geo graphical-interface gene-expression bioinformatics-pipeline interactive-analysis shiny-apps rna-seq-analysis rna-seq-data interactive-visualizations bioinformatics-analysis gene-expression-omnibus rna-seq-pipeline geo-data-processing grein

UpdatedMay 28, 2019
HTML

bystrogenomics /bystro

Natural Language Search and Analysis of High Dimensional Genomic Data

bioinformatics genomics bioinformatics-pipeline bioinformatics-analysis bioinformatics-scripts bioinformatics-databases bioinformatics-algorithms genomics-search

UpdatedAug 7, 2025
Python

greenelab /multi-plier

An unsupervised transfer learning approach for rare disease transcriptomics

machine-learning analysis dataset methodology bioinformatics-analysis gene-expression-signatures multiplier plier rare-diseases

UpdatedJan 27, 2020
HTML

pyladies-brazil /grupo-estudo-bioinformatica

Repositório do grupo de estudo de Bioinformática da rede de comunidades das PyLadies Brasil.

bioinformatics bioinformatics-pipeline biopython bioinformatics-analysis rosalind estudo

UpdatedOct 10, 2021
Jupyter Notebook

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