Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.

List of Computer Science courses with video lectures.

• UpdatedNov 20, 2025

Data Apps & Dashboards for Python. No JavaScript Required.

• UpdatedNov 27, 2025
• Python

Official git repository for Biopython (originally converted from CVS)

• UpdatedNov 28, 2025
• Python

A curated list of awesome Bioinformatics libraries and software.

• UpdatedMar 21, 2025

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

• UpdatedOct 23, 2025

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

• UpdatedOct 21, 2025
• Python

A DSL for data-driven computational pipelines

• UpdatedNov 28, 2025
• Groovy

Making Protein folding accessible to all!

• UpdatedNov 28, 2025
• Jupyter Notebook

Single-cell analysis in Python. Scales to >100M cells.

• UpdatedNov 25, 2025
• Python

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

• UpdatedNov 23, 2025
• C++

A versatile pairwise aligner for genomic and spliced nucleotide sequences

• UpdatedOct 5, 2025
• C

MMseqs2: ultra fast and sensitive search and clustering suite

• UpdatedNov 25, 2025
• C

A full spaCy pipeline and models for scientific/biomedical documents.

• UpdatedNov 17, 2025
• Python

Official code repository for GATK versions 4 and up

• UpdatedNov 26, 2025
• Java

Conda recipes for the bioconda channel.

• UpdatedNov 29, 2025
• Shell

Data intensive science for everyone.

• UpdatedNov 27, 2025
• Python

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

• UpdatedMar 22, 2025
• C

Toolkit for processing sequences in FASTA/Q formats

• UpdatedJun 1, 2025
• C

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

• UpdatedNov 24, 2025
• Go

Aggregate results from bioinformatics analyses across many samples into a single report.

• UpdatedNov 28, 2025
• JavaScript