The MATLAB toolbox for MEG, EEG and iEEG analysis

• UpdatedMar 17, 2025
• MATLAB

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

• UpdatedMar 5, 2025
• HTML

Brain Imaging Data Structure (BIDS) Specification

• UpdatedMar 13, 2025
• Python

The Starter-kit has moved to the new BIDS website.

• UpdatedFeb 21, 2025
• MATLAB

Python tools for querying and manipulating BIDS datasets.

• UpdatedMar 13, 2025
• Python

A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.

• UpdatedMar 3, 2025
• MATLAB

Validator for the Brain Imaging Data Structure

• UpdatedMar 11, 2025
• JavaScript

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

• UpdatedJan 10, 2025
• Python

Preprocessing of diffusion MRI

• UpdatedFeb 26, 2025
• Python

Automatically process entire electrophysiological datasets using MNE-Python.

• UpdatedMar 10, 2025
• Python

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

• UpdatedMar 10, 2025
• Python

BIDScoin converts your source-level neuroimaging data to BIDS

• UpdatedMar 17, 2025
• Python

A free and open platform for analyzing and sharing neuroimaging data

• UpdatedMar 14, 2025
• TypeScript

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

• UpdatedMar 12, 2025
• Shell

A Visual Studio extension that enhances development functionality in Business Intelligence Development Studio (BIDS) and SQL Server Data Tools (SSDT).

• UpdatedMar 16, 2023
• C#

ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data

• UpdatedMar 14, 2025
• Python

Temporal Network Tools

• UpdatedNov 13, 2023
• Python

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

• UpdatedFeb 4, 2025
• HTML

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

• UpdatedNov 27, 2023
• Python

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

• UpdatedJun 7, 2022
• MATLAB