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#

bgzip

Here are 7 public repositories matching this topic...

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A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

  • UpdatedFeb 27, 2025
  • C

extract random-positioned data from gzip files with no penalty, including gzip tailing like with 'tail -f' !

  • UpdatedNov 27, 2024
  • C

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

  • UpdatedJan 28, 2025
  • C

GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools

  • UpdatedJun 27, 2020
  • Perl

bgzf/ciso/daxcr/dictzip/gzinga/migz/razf frontends using zlib/zlib-ng/7-zip/zopfli/libdeflate/miniz/libslz/igzip/cryptopp/kzip backends with parallel (de)compression. compilable with gcc/clang/icc/open64.

  • UpdatedFeb 10, 2025
  • C

R binder for pairix - 2D/1D genomic indexing and querying on bgzipped text file

  • UpdatedApr 12, 2019
  • C

Continuous tail command (like `tail -f`) for bgzip files

  • UpdatedAug 22, 2019
  • Perl

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