barcoding
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A versatile sequenced read processor for nanopore direct RNA sequencing
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May 24, 2020 - Python
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.
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Aug 25, 2023 - Shell
Code repository for macsGESTALT single cell lineage tracing analysishttps://doi.org/10.1101/2020.08.11.245787
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May 10, 2021 - HTML
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi:https://doi.org/10.1101/353904
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Feb 9, 2021 - Perl
A molecular identification toolkit for rattan palms using genome skimming and target capture data.
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Oct 2, 2024 - Shell
Wrapper for BOLD API (+ barcode auditing)Web-app to explore Mycobacterium tuberculosis complex
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Jun 6, 2024 - Python
A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file
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Apr 6, 2023 - Python
Variant detection and lineage barcoding of Mycobacterium tuberculosis
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Mar 7, 2023 - Python
Variability measures of DNA barcodes sequences (i.e. Intraspecific and Interespecific)
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Sep 17, 2018 - R
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