Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

• UpdatedFeb 12, 2025
• Parrot

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

• UpdatedOct 31, 2024
• JavaScript

A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models

• UpdatedNov 29, 2022
• R

Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.

• UpdatedJan 6, 2023
• HTML

Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.

• UpdatedDec 9, 2022
• Python

A tool for downloading HLA alleles, epitopes and frequencies

• UpdatedJul 21, 2023
• Python

GAT (Generic Genome-Wide Association Tool)

• UpdatedMar 8, 2022
• Python

Extract alleles from genome assemblies

• UpdatedSep 3, 2024
• Python

A command-line parser for VCF files designed for population genetics analyses.

• UpdatedApr 14, 2023
• Java

Script for interactive download schemas and definitions for any bigsdb installation using its api. Useful for downloading wg/cgMLST genes and alleles.

• UpdatedDec 21, 2021
• Python

An application that handles and manipulates functions and variables related to the type of blood system: ABO System.

• UpdatedMar 2, 2022
• Jupyter Notebook

R package to find samples that represent all variables

• UpdatedJan 6, 2025
• R

This is simple project to simulate Alleles

• UpdatedJun 1, 2022
• JavaScript

Create admixture model files (*.F, *.alleles) based on WBBC project of Westlake University.

• UpdatedJan 23, 2025
• Python