Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

• UpdatedMar 17, 2025
• Python

An open-source Raspberry-Pi based photobioreactor for cultivating and assessing physiology (photosynthesis & productivity) in microscopic algae.

• UpdatedSep 4, 2023
• C++

An open-source Arduino based chlorophyll fluorometer for quantifying photosynthesis in photosynthetic organisms.

• UpdatedSep 19, 2023
• C++

A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.

• UpdatedSep 3, 2024
• Perl

Git repository for the R package "LOBSTAHS" (Lipid and Oxylipin Biomarker Screening Through Adduct Hierarchy Sequences)

• UpdatedOct 27, 2022
• R

Detection of algal bodies in coral-reef dataset

• UpdatedAug 18, 2018
• Python

Control Scripts for Photon Systems Instruments (PSI) Bioreactor Client

• UpdatedAug 17, 2022
• JavaScript

a carbonate chemistry model to predict CO2 losses to the atmosphere from algal raceway ponds

• UpdatedJun 20, 2021
• Python

A web app to predict algae levels in Bay of Bengal

• UpdatedOct 22, 2021
• HTML

Resources for how to live permanently in the oceans.

• UpdatedJan 13, 2019

R package for calculating Algal Stream Condition Index (ASCI) scores

• UpdatedMay 1, 2024
• R

Open source XPRIZE carbon removal entry

• UpdatedMay 9, 2021
• Python

This repository contains the code to reproduce the environmental life cycle assessment study of a novel pilot scale Spirulina biorefinery. This work was performed in the frame of the Circular Bio-based Europe project "SpiralG" from 2019 to 2022.

• UpdatedJan 23, 2025
• Jupyter Notebook

Lacustrine algae bloom classification with satellite imagery and a neural network.

• UpdatedNov 29, 2017
• Jupyter Notebook

Repository of assembled reference genomes of the green model alga Chlamydomonas reinhardtii including files optimised for visualisation in IGV

• UpdatedMay 5, 2020

your one-stop guide to Furesø Lake, a captivating natural wonder near Copenhagen. Whether you're a local Dane seeking a deeper understanding of this cherished landmark or an English-speaking visitor planning a trip , this app has something for everyone!

• UpdatedMar 12, 2025
• Python

Contribution of soil algae to the global carbon cycle

• UpdatedMar 23, 2022
• Jupyter Notebook

A simulation as a proof of concept for automated skimming of algae in mostly still water.

• UpdatedMar 18, 2017
• C#

ASAFind latest version, with options for graphical output and ppc protein prediction

• UpdatedMar 14, 2025
• Python

Lab website, Johns Hopkins University, Betenbaugh Lab

• UpdatedJul 5, 2017
• HTML