10x

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

rust rna-seq quantification transcriptomics single-cell 10x single-cell-rna-seq

UpdatedMar 3, 2025
Rust

Hoohm /CITE-seq-Count

Star81

A tool that allows to get UMI counts from a single cell protein assay

single-cell 10x dropseq citeseq

UpdatedJul 22, 2024
Python

lilab-bcb /cirrocumulus

Star79

Bring your single-cell data to life

visualization webgl bioinformatics spatial data-visualization scrna-seq transcriptomics single-cell 10x smartseq2 seurat scanpy anndata

UpdatedMar 3, 2025
JavaScript

nunofonseca /fastq_utils

Star34

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

validation ngs sequencing scrna-seq umi single-cell fastq high-throughput-sequencing barcodes 10x drop-seq fastq-files dge umi-count fastq-filterpair digital-gene-expression fastq-validation

UpdatedJul 17, 2024
C

soasis /idk

Star29

The IDK (Industrial Development Kit) library!

engineering cpp cpp17 industrial 10x cpp17-library

UpdatedAug 20, 2024
C++

RayBenefield /dev-xp

Star19

🏃 A Monorepo of projects reaching towards EPIC proportions, maintained by one person.

nodejs testing npm automation company solo dx monorepo ci-cd pomodoro worklog dex transmutation 10x semcom

UpdatedMar 10, 2025
AutoHotkey

morispi /LRez

Star12

Standalone tool and library allowing to work with barcoded linked-reads

bioinformatics barcode index linked barcodes reads 10x 10x-genomics 10xgenomics linked-reads stlfr haplotagging tell-seq

UpdatedDec 7, 2024
C++

pontushojer /awesome-linked-reads

Star11

Collection of tools and resources for linked-reads

awesome-list 10x 10x-genomics dbs linked-reads stlfr haplotagging tell-seq

UpdatedDec 17, 2024

jmackie /emoji-picker

Star10

🕺 GUI picker thing for emoji power users

rust gtk emoji-picker 10x

UpdatedFeb 14, 2021
Rust

baj12 /scShinyHub

Star6

shiny app for single cell RNAseq experiments, with plug-in like structure for flexible integration of tools and visualizations.

shiny single-cell 10x

UpdatedOct 29, 2019
R

Pdawg-bytes /windows10x-browser

Star5

A recreation of Windows 10X, in your browser.

react css windows html web js 10x

UpdatedFeb 15, 2023
CSS

jdecode /x-api

Sponsor

Star4

Laravel API boilerplate for 10-x developers!

docker boilerplate laravel docker-compose pest darkmode 10x tailwindcss alpinejs

UpdatedJan 9, 2025
PHP

Barski-lab /sc-seq-analysis

Star4

CWL toolkit for single-cell sequencing data analysis

workflow bioinformatics rna-seq genomics scrna-seq fair cwl single-cell 10x 10x-genomics scatac-seq

UpdatedNov 11, 2022
Common Workflow Language

R package: {rfca} Random forest-based cell annotation methods for scRNAseq analysis. {rfca} contains methods which identifies cell types using machine learning trained on a diversity of cell types, without the need for a labelled training dataset. It also allows you to train your own cell prediction models with your own labels (cell type, subtyp…

machine-learning random-forest scrna-seq 10x 10x-genomics seurat scrna-seq-analysis scrnaseq-datasets