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Commit65829ee

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fix manual links
1 parentd00374c commit65829ee

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6 files changed

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6 files changed

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‎R/branching_times.R‎

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#' @param phy phylo object or ltable
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#' @return vector of branching times
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#' @description C++ based alternative to
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#' \link[ape::branching.times]{ape::branching.times}.
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#' \link[ape:branching.times]{ape::branching.times}.
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#' @export
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branching_times<-function(phy) {
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‎R/minmax_adj.R‎

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#' adjacency matrix are weighted by branch length. Then, using the adjacency
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#' matrix, we calculate the spectral properties of the matrix, e.g. the
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#' minimum and maximum eigenvalues of the matrix.
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#' When the R package \link[RSpectra]{RSpectra} is available,
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#' When the R package \pkg{RSpectra} is available,
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#' a faster calculation can be used, which does not calculate all eigenvalues,
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#' but only the maximum and minimum. As such, when using this option,
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#' the vector of all eigenvalues is not returned.

‎R/minmax_laplace.R‎

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#' @description Calculates the eigenvalues of the Laplacian Matrix, where the
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#' Laplacian matrix is the matrix representation of a graph, in this case a
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#' phylogeny.
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#' When the R package \link[RSpectra]{RSpectra} is available, a faster
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#' When the R package \pkg{RSpectra} is available, a faster
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#' calculation can be used, which does not calculate all eigenvalues, but only
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#' the maximum and minimum. As such, when using this option, the vector of all
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#' eigenvalues is not returned.

‎man/branching_times.Rd‎

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‎man/minmax_adj.Rd‎

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‎man/minmax_laplace.Rd‎

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