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Thediseasystore package provides feature stores implemented in Rspecifically designed for serve disease data for epidemic preparedness.

What makes adiseasystore special, is that features are time-versionedvia{SCDB} and can be automatically coupled and stratified within thediseasystore package. This allows for a high degree of flexibility andreproducibility in the handling of disease data.

The package forms the data-backbone of the{diseasy} package.

Different data sources are handled by individualdiseasystores whicheach facilitate access to the relevant disease data for the given datasource.

Data for different diseases will typically be structured in differentways. Thediseasystore package currently implements the Google HealthCOVID-19 Open Repository with morediseasystores on the way.

Thediseasystore package is designed to handle both individual-leveldata (typically protected) and semi-aggregated data (typically publiclyavailable).

If the data is at the individual-level, the feature store is fullydynamic and can adapt to (virtually) any stratification that the userspecifies. If the data conversely is semi-aggregated, the data can onlybe stratified at the levels of the semi-aggregation (or at higherlevels).

# Install diseasystore from CRAN:install.packages("diseasystore")# Alternatively, install the development version from github:# install.packages("devtools")devtools::install_github("ssi-dk/diseasystore")

For basic usage examples, seevignette("diseasystore").