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Using the output to differentiate between malignant and benign cells

Status: Open.

#32 In single-cell-genetics/XClone;

·akiviaho openedon Jun 12, 2025

CNV plots from combine module

Status: Open.

#31 In single-cell-genetics/XClone;

·kzb193 openedon Jun 10, 2025

directly make an input AnnData object satisfying the output structure

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#25 In single-cell-genetics/XClone;

·Rongtingting openedon Dec 22, 2024

compressed saved adata

Status: Open.

#22 In single-cell-genetics/XClone;

·Rongtingting openedon Oct 10, 2024

Unable to Use Prior Whole Genome Sequencing Information

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In single-cell-genetics/XClone;

·DarioS openedon Aug 26, 2024

Finding normal cells and tumor cells in BAF module

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#16 In single-cell-genetics/XClone;

·Rongtingting openedon Aug 23, 2024

Plotting issue in python 3.9, <code>multi_lut_set</code> for <code>xclone.pl.Complex_BAF_CNV_visualization</code>.

bugSomething isn't workingSomething isn't working

Status: Open.

#14 In single-cell-genetics/XClone;

·Rongtingting openedon Aug 9, 2024

Applying XClone to mouse scRNA-seq: xcltk pre-processing for BAF data

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#11 In single-cell-genetics/XClone;

·NickolasTeo openedon Aug 12, 2023

Applying XClone to mouse scRNA-seq: xclone.pp.xclonedata

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#10 In single-cell-genetics/XClone;

·NickolasTeo openedon Aug 12, 2023