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SeqAn

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

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Showing 10 of 51 repositories

sahara Public
Approximate Pattern Matching with Search Schemes
seqan/sahara’s past year of commit activity
C++ 2 1 0 1 UpdatedFeb 18, 2026
actions Public
seqan/actions’s past year of commit activity
Shell0CC-BY-4.0 3 0 0 UpdatedFeb 16, 2026
raptor Public
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
seqan/raptor’s past year of commit activity
C++ 53 17 8 5 UpdatedJan 31, 2026
chopper Public
A tool for partitioning a set of sequences into similar batches.
seqan/chopper’s past year of commit activity
C++ 9BSD-3-Clause 9 6 4 UpdatedJan 31, 2026
app-template Public template
This template comes pre-configured with various SeqAn libraries and a basic Continuous Integration setup. It is designed to provide a robust starting point for your projects, while offering the flexibility to customize and adapt to your specific requirements.
seqan/app-template’s past year of commit activity
CMake 6 9 20 0 UpdatedJan 31, 2026
needle Public
A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences
seqan/needle’s past year of commit activity
C++ 14 9 7 2 UpdatedJan 31, 2026
FPGAlign Public
seqan/FPGAlign’s past year of commit activity
C++0 1 0 1 UpdatedJan 31, 2026
hibf Public
HIBF and IBF
seqan/hibf’s past year of commit activity
C++ 4 3 6 6 UpdatedJan 28, 2026
seqan3 Public
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
seqan/seqan3’s past year of commit activity
C++ 446 87 30 3 UpdatedJan 24, 2026
dream-stellar Public
Fast and exact local alignments
seqan/dream-stellar’s past year of commit activity
C++ 3BSD-3-Clause 2 5 6 UpdatedJan 24, 2026