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1. EPI-ClusTEPI-ClusTPublic

   User-friendly distance-free method for defining clusters from phylogenetic trees

   Python 2

2. PhylogeographyPhylogeographyPublic

   This repository hosts code for an animated phylogeographic plot of HCV spread among PWID in India

   JavaScript 1

3. sociospatial-baselinesociospatial-baselinePublic

   This repository hosts data and code for an interactive sociospatial network visualization of baseline HIV/HCV prevalence among a cohort of people who inject drugs in New Delhi, India. Visit the lin…

   JavaScript

4. NGSToolsNGSToolsPublic

   Forked fromCzh3/NGSTools

   Next-Generation Sequencing(NGS) toolkits.

   Python

5. SociospatialNet-IncidenceSociospatialNet-IncidencePublic

   This repository hosts code for an interactive sociospatial network visualization of HIV incidence among a cohort of PWID in New Delhi, India

   JavaScript

6. CoupledMCMCCoupledMCMCPublic

   Forked fromnicfel/CoupledMCMC

   Coupled MCMC for Beast2

   Java