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GBIF Ruby client; docs:http://www.rubydoc.info/gems/gbifrb/0.1.0

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sckott/gbifrb

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gem versionRubycodecov.io

gbifrb is a low level client for the GBIF API

Other GBIF API clients:

Changes

For changes see theChangelog

API

Methods in relation toGBIF API routes

registry

  • /node -Gbif::Registry.nodes
  • /network -Gbif::Registry.networks
  • /installations -Gbif::Registry.installations
  • /organizations -Gbif::Registry.organizations
  • /dataset_metrics -Gbif::Registry.dataset_metrics
  • /datasets -Gbif::Registry.datasets
  • /dataset_suggest -Gbif::Registry.dataset_suggest
  • /dataset_search -Gbif::Registry.dataset_search

species

  • /species/match -Gbif::Species.name_backbone
  • /species/suggest -Gbif::Species.name_suggest
  • /species/search -Gbif::Species.name_lookup
  • /species -Gbif::Species.name_usage

occurrences

  • /search -Gbif::Occurrences.search
  • /get -Gbif::Occurrences.get
  • /get_verbatim -Gbif::Occurrences.get_verbatim
  • /get_fragment -Gbif::Occurrences.get_fragment

Install

Release version

gem install gbifrb

Development version

git clone git@github.com:sckott/gbifrb.gitcd gbifrbrake install

Examples, in Ruby repl

Registry module

Nodes

require'gbifrb'registry=Gbif::Registryregistry.nodes(limit:5)

Networks

registry.networks(uuid:'16ab5405-6c94-4189-ac71-16ca3b753df7')

Species module

GBIF backbone

species=Gbif::Speciesspecies.name_backbone(name:"Helianthus")

Suggester

species.name_suggest(q:"Helianthus")

Lookup

species.name_lookup(q:"Helianthus")

Lookup example with more parameters: name usages of plants where accepted scientific name includes 'reptans':

species.name_lookup(q:'reptans',higherTaxonKey:6,nameType:'SCIENTIFIC',status:'ACCEPTED')

Name usage (/species)

species.name_usage(name:"Helianthus")

Name usage example with more parameters: name usages of 'Andropogon' in Database of Vascular Plants of Canada (VASCAN) checklist:

species.name_usage(name:'Andropogon',datasetKey:'3f8a1297-3259-4700-91fc-acc4170b27ce')

Occurrences

occ=Gbif::Occurrencesocc.search(taxonKey:3329049)occ.search(taxonKey:3329049,limit:2)occ.search(scientificName:'Ursus americanus')

curl options

species=Gbif::Speciesspecies.name_backbone("Helianthus",verbose:true)

Todo

  • CLI interface
  • occurrence metrics methods
  • occurrence downloads methods
  • OAI-PMH interface

Meta

  • Please note that this project is released with aContributor Code of Conduct. By participating in this project you agree to abide by its terms.
  • License: MIT

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