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1. pysradbpysradbPublic

   Package for fetching metadata and downloading data from SRA/ENA/GEO

   Python 325 53

2. covmullercovmullerPublic

   Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID

   R 3

3. pySCTransformpySCTransformPublic

   Python package to perform normalization and variance-stabilization of single-cell data

   Jupyter Notebook 23 11

4. blogblogPublic

   Jupyter Notebook 2

5. gencode_regionsgencode_regionsPublic

   Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

   Jupyter Notebook 106 52

6. smithlabcode/ribotricersmithlabcode/ribotricerPublic

   A tool for accurately detecting actively translating ORFs from Ribo-seq data

   Python 36 8