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Repository for the on-line metaRbolomics book athttps://rformassspectrometry.github.io/metaRbolomics-book/

Including some active code that is executed upon each build.

This material, unless excplicitly otherwise stated, is CC-BY 4.0 licenced.

There is a docker image that contains the build environmentto render the book athttps://hub.docker.com/repository/docker/sneumann/metarbolomics-book-baseOutput directory and output format are configurable via environmentvariables.

Also check:

https://stackoverflow.com/questions/44143110/visualizing-r-function-dependencies

https://cran.r-project.org/web/packages/miniCRAN/vignettes/miniCRAN-dependency-graph.html

https://cran.r-project.org/web/packages/pkgnet/vignettes/pkgnet-intro.htmlpkgnet can analyze any R package locally installed. (Run installed.packages() to see the full list of packages installed on your system.)

ThetravisScript.sh uses the Docker image and builds the book in thebuild directory.

Simply run

./travisScript.sh

to build the book.Output will be saved in thebuild/public directory.