Commitccc2415

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`@@ -22,6 +22,8 @@ setOldClass(c("tbl_df", "tbl", "data.frame"))`
`22`	`22`	`#' \item{snp_interaction}{Whether the association is for a SNP-SNP interaction.}`
`23`	`23`	`#' \item{snp_type}{Whether the SNP has previously been reported. Either`
`24`	`24`	`#' \code{'known'} or \code{'novel'}.}`
	`25`	`+#' \item{risk_frequency}{Reported risk/effect allele frequency associated with`
	`26`	`+#' strongest SNP in controls.}`
`25`	`27`	`#' \item{standard_error}{Standard error of the effect size.}`
`26`	`28`	`#' \item{range}{Reported 95\% confidence interval associated with strongest SNP`
`27`	`29`	`#' risk allele, along with unit in the case of beta coefficients. If 95\% CIs`
`@@ -191,6 +193,7 @@ associations_tbl <- function(`
`191`	`193`	`multiple_snp_haplotype=logical(),`
`192`	`194`	`snp_interaction=logical(),`
`193`	`195`	`snp_type=character(),`
	`196`	`+risk_frequency= double(),`
`194`	`197`	`standard_error= double(),`
`195`	`198`	`range=character(),`
`196`	`199`	`or_per_copy_number= double(),`
`@@ -210,6 +213,7 @@ associations_tbl <- function(`
`210`	`213`	`multiple_snp_haplotype=multiple_snp_haplotype,`
`211`	`214`	`snp_interaction=snp_interaction,`
`212`	`215`	`snp_type=snp_type,`
	`216`	`+risk_frequency=risk_frequency,`
`213`	`217`	`standard_error=standard_error,`
`214`	`218`	`range=range,`
`215`	`219`	`or_per_copy_number=or_per_copy_number,`

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`@@ -41,6 +41,7 @@ a_obj_to_associations_tbl <- function(association_ids, obj) {`
`41`	`41`	`"multiSnpHaplotype",`
`42`	`42`	`"snpInteraction",`
`43`	`43`	`"snpType",`
	`44`	`+"riskFrequency",`
`44`	`45`	`"standardError",`
`45`	`46`	`"range",`
`46`	`47`	`"orPerCopyNum",`
`@@ -64,6 +65,7 @@ a_obj_to_associations_tbl <- function(association_ids, obj) {`
`64`	`65`	`multiple_snp_haplotype= recode_missing(obj$multiSnpHaplotype,type='lgl'),`
`65`	`66`	`snp_interaction= recode_missing(obj$snpInteraction,type='lgl'),`
`66`	`67`	`snp_type= recode_missing(obj$snpType),`
	`68`	`+risk_frequency= recode_missing(obj$riskFrequency,type='dbl'),`
`67`	`69`	`standard_error= recode_missing(obj$standardError,type='dbl'),`
`68`	`70`	`range= recode_missing(obj$range,from= c('nr','NR','NA','na','[NR]')),`
`69`	`71`	`or_per_copy_number= recode_missing(obj$orPerCopyNum,type='dbl'),`

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