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A database interface (DBI) definition for communication between R and RDBMSs
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r-dbi/DBI
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The DBI package helps connecting R to database management systems(DBMS). DBI separates the connectivity to the DBMS into a “front-end”and a “back-end”. The package defines an interface that is implementedbyDBI backends such as:
and many more, see thelist ofbackends. R scripts andpackages use DBI to access various databases through their DBI backends.
The interface defines a small set of classes and methods similar inspirit to Perl’sDBI, Java’s JDBC, Python’sDB-API, and Microsoft’sODBC. It supports the followingoperations:
- connect/disconnect to the DBMS
- create and execute statements in the DBMS
- extract results/output from statements
- error/exception handling
- information (meta-data) from database objects
- transaction management (optional)
Most users who want to access a database do not need to install DBIdirectly. It will be installed automatically when you install one of thedatabase backends:
- RPostgres for PostgreSQL,
- RMariaDB for MariaDB or MySQL,
- RSQLite for SQLite,
- odbc for databases that you canaccess viaODBC,
- bigrquery,
- … .
You can install the released version of DBI fromCRAN with:
install.packages("DBI")And the development version fromGitHub with:
# install.packages("devtools")devtools::install_github("r-dbi/DBI")
The following example illustrates some of the DBI capabilities:
library(DBI)# Create an ephemeral in-memory RSQLite databasecon<- dbConnect(RSQLite::SQLite(),dbname=":memory:")dbListTables(con)#> character(0)dbWriteTable(con,"mtcars",mtcars)dbListTables(con)#> [1] "mtcars"dbListFields(con,"mtcars")#> [1] "mpg" "cyl" "disp" "hp" "drat" "wt" "qsec" "vs" "am" "gear"#> [11] "carb"dbReadTable(con,"mtcars")#> mpg cyl disp hp drat wt qsec vs am gear carb#> 1 21.0 6 160.0 110 3.90 2.620 16.46 0 1 4 4#> 2 21.0 6 160.0 110 3.90 2.875 17.02 0 1 4 4#> 3 22.8 4 108.0 93 3.85 2.320 18.61 1 1 4 1#> 4 21.4 6 258.0 110 3.08 3.215 19.44 1 0 3 1#> 5 18.7 8 360.0 175 3.15 3.440 17.02 0 0 3 2#> 6 18.1 6 225.0 105 2.76 3.460 20.22 1 0 3 1#> 7 14.3 8 360.0 245 3.21 3.570 15.84 0 0 3 4#> 8 24.4 4 146.7 62 3.69 3.190 20.00 1 0 4 2#> 9 22.8 4 140.8 95 3.92 3.150 22.90 1 0 4 2#> [ reached 'max' / getOption("max.print") -- omitted 23 rows ]# You can fetch all results:res<- dbSendQuery(con,"SELECT * FROM mtcars WHERE cyl = 4")dbFetch(res)#> mpg cyl disp hp drat wt qsec vs am gear carb#> 1 22.8 4 108.0 93 3.85 2.320 18.61 1 1 4 1#> 2 24.4 4 146.7 62 3.69 3.190 20.00 1 0 4 2#> 3 22.8 4 140.8 95 3.92 3.150 22.90 1 0 4 2#> 4 32.4 4 78.7 66 4.08 2.200 19.47 1 1 4 1#> 5 30.4 4 75.7 52 4.93 1.615 18.52 1 1 4 2#> 6 33.9 4 71.1 65 4.22 1.835 19.90 1 1 4 1#> 7 21.5 4 120.1 97 3.70 2.465 20.01 1 0 3 1#> 8 27.3 4 79.0 66 4.08 1.935 18.90 1 1 4 1#> 9 26.0 4 120.3 91 4.43 2.140 16.70 0 1 5 2#> [ reached 'max' / getOption("max.print") -- omitted 2 rows ]dbClearResult(res)# Or a chunk at a timeres<- dbSendQuery(con,"SELECT * FROM mtcars WHERE cyl = 4")while (!dbHasCompleted(res)) {chunk<- dbFetch(res,n=5) print(nrow(chunk))}#> [1] 5#> [1] 5#> [1] 1dbClearResult(res)dbDisconnect(con)
There are four main DBI classes. Three which are each extended byindividual database backends:
DBIObject: a common base class for all DBI.DBIDriver: a base class representing overall DBMS properties.Typically generator functions instantiate the driver objects likeRSQLite(),RPostgreSQL(),RMySQL()etc.DBIConnection: represents a connection to a specific databaseDBIResult: the result of a DBMS query or statement.
All classes arevirtual: they cannot be instantiated directly andinstead must be subclassed.
Databases using R describes the tools andbest practices in this ecosystem.
TheDBI project site hosts a blog whererecent developments are presented.
A history of DBI byDavid James, the driving force behind the development of DBI, and manyof the packages that implement it.
Please note that theDBI project is released with aContributor Codeof Conduct. By contributingto this project, you agree to abide by its terms.
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