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Update to numba 0.59 and other version updates#536

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Merged
eriknw merged 7 commits intopython-graphblas:mainfromeriknw:numba0.59
Feb 6, 2024
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55 changes: 31 additions & 24 deletions.github/workflows/test_and_build.yml
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Expand Up@@ -167,35 +167,38 @@ jobs:
# First let's randomly get versions of dependencies to install.
# Consider removing old versions when they become problematic or very old (>=2 years).
nxver=$(python -c 'import random ; print(random.choice(["=2.7", "=2.8", "=3.0", "=3.1", "=3.2", ""]))')
yamlver=$(python -c 'import random ; print(random.choice(["=5.4", "=6.0", ""]))')
sparsever=$(python -c 'import random ; print(random.choice(["=0.13", "=0.14", ""]))')
fmmver=$(python -c 'import random ; print(random.choice(["=1.4", "=1.5", "=1.6", "=1.7", ""]))')
sparsever=$(python -c 'import random ; print(random.choice(["=0.13", "=0.14", "=0.15", ""]))')
# Randomly choosing versions of dependencies based on Python version works surprisingly well...
if [[ ${{ startsWith(steps.pyver.outputs.selected, '3.9') }} == true ]]; then
npver=$(python -c 'import random ; print(random.choice(["=1.21", "=1.22", "=1.23", "=1.24", "=1.25", "=1.26", ""]))')
spver=$(python -c 'import random ; print(random.choice(["=1.9", "=1.10", "=1.11", ""]))')
pdver=$(python -c 'import random ; print(random.choice(["=1.2", "=1.3", "=1.4", "=1.5", "=2.0", "=2.1", ""]))')
npver=$(python -c 'import random ; print(random.choice(["=1.22", "=1.23", "=1.24", "=1.25", "=1.26", ""]))')
spver=$(python -c 'import random ; print(random.choice(["=1.9", "=1.10", "=1.11", "=1.12", ""]))')
pdver=$(python -c 'import random ; print(random.choice(["=1.2", "=1.3", "=1.4", "=1.5", "=2.0", "=2.1", "=2.2", ""]))')
akver=$(python -c 'import random ; print(random.choice(["=1.9", "=1.10", "=2.0", "=2.1", "=2.2", "=2.3", "=2.4", "=2.5", ""]))')
fmmver=$(python -c 'import random ; print(random.choice(["=1.4", "=1.5", "=1.6", "=1.7", ""]))')
yamlver=$(python -c 'import random ; print(random.choice(["=5.4", "=6.0", ""]))')
elif [[ ${{ startsWith(steps.pyver.outputs.selected, '3.10') }} == true ]]; then
npver=$(python -c 'import random ; print(random.choice(["=1.21", "=1.22", "=1.23", "=1.24", "=1.25", "=1.26", ""]))')
spver=$(python -c 'import random ; print(random.choice(["=1.9", "=1.10", "=1.11", ""]))')
pdver=$(python -c 'import random ; print(random.choice(["=1.3", "=1.4", "=1.5", "=2.0", "=2.1", ""]))')
npver=$(python -c 'import random ; print(random.choice(["=1.22", "=1.23", "=1.24", "=1.25", "=1.26", ""]))')
spver=$(python -c 'import random ; print(random.choice(["=1.9", "=1.10", "=1.11", "=1.12", ""]))')
pdver=$(python -c 'import random ; print(random.choice(["=1.3", "=1.4", "=1.5", "=2.0", "=2.1", "=2.2", ""]))')
akver=$(python -c 'import random ; print(random.choice(["=1.9", "=1.10", "=2.0", "=2.1", "=2.2", "=2.3", "=2.4", "=2.5", ""]))')
fmmver=$(python -c 'import random ; print(random.choice(["=1.4", "=1.5", "=1.6", "=1.7", ""]))')
yamlver=$(python -c 'import random ; print(random.choice(["=5.4", "=6.0", ""]))')
elif [[ ${{ startsWith(steps.pyver.outputs.selected, '3.11') }} == true ]]; then
npver=$(python -c 'import random ; print(random.choice(["=1.23", "=1.24", "=1.25", "=1.26", ""]))')
spver=$(python -c 'import random ; print(random.choice(["=1.9", "=1.10", "=1.11", ""]))')
pdver=$(python -c 'import random ; print(random.choice(["=1.5", "=2.0", "=2.1", ""]))')
spver=$(python -c 'import random ; print(random.choice(["=1.9", "=1.10", "=1.11", "=1.12", ""]))')
pdver=$(python -c 'import random ; print(random.choice(["=1.5", "=2.0", "=2.1", "=2.2", ""]))')
akver=$(python -c 'import random ; print(random.choice(["=1.10", "=2.0", "=2.1", "=2.2", "=2.3", "=2.4", "=2.5", ""]))')
fmmver=$(python -c 'import random ; print(random.choice(["=1.4", "=1.5", "=1.6", "=1.7", ""]))')
yamlver=$(python -c 'import random ; print(random.choice(["=5.4", "=6.0", ""]))')
else # Python 3.12
npver=$(python -c 'import random ; print(random.choice(["=1.26", ""]))')
spver=$(python -c 'import random ; print(random.choice(["=1.11", ""]))')
pdver=$(python -c 'import random ; print(random.choice(["=2.1", ""]))')
spver=$(python -c 'import random ; print(random.choice(["=1.11", "=1.12", ""]))')
pdver=$(python -c 'import random ; print(random.choice(["=2.1", "=2.2", ""]))')
akver=$(python -c 'import random ; print(random.choice(["=2.4", "=2.5", ""]))')
fmmver=$(python -c 'import random ; print(random.choice(["=1.7", ""]))')
yamlver=$(python -c 'import random ; print(random.choice(["=6.0", ""]))')
fi
# But there may be edge cases of incompatibility we need to handle (more handled below)
if [[ ${pdver} == "=2.1" && ${npver} == "=1.21" ]]; then
pdver="=2.0"
fi
if [[ ${{ steps.sourcetype.outputs.selected }} == "source" || ${{ steps.sourcetype.outputs.selected }} == "upstream" ]]; then
# TODO: there are currently issues with some numpy versions when
# installing python-suitesparse-grphblas from source or upstream.
Expand DownExpand Up@@ -226,28 +229,32 @@ jobs:
psgver=$(python -c 'import random ; print(random.choice(["==7.4.0.0", "==7.4.1.0", "==7.4.2.0", "==7.4.3.0", "==7.4.3.1", "==7.4.3.2", "==8.0.2.1", "==8.2.0.1", "==8.2.1.0", ""]))')
fi
if [[ ${npver} == "=1.26" ]] ; then
numbaver=""
numbaver=$(python -c 'import random ; print(random.choice(["=0.58", "=0.59", ""]))')
if [[ ${spver} == "=1.9" ]] ; then
spver=$(python -c 'import random ; print(random.choice(["=1.10", "=1.11", ""]))')
fi
elif [[ ${npver} == "=1.25" ]] ; then
numbaver=""
numbaver=$(python -c 'import random ; print(random.choice(["=0.58", "=0.59", ""]))')
elif [[ ${npver} == "=1.24" || ${{ startsWith(steps.pyver.outputs.selected, '3.11') }} == true ]] ; then
numbaver=$(python -c 'import random ; print(random.choice(["=0.57", "=0.58", ""]))')
numbaver=$(python -c 'import random ; print(random.choice(["=0.57", "=0.58", "=0.59", ""]))')
elif [[ ${npver} == "=1.21" ]] ; then
numbaver=$(python -c 'import random ; print(random.choice(["=0.55", "=0.56", "=0.57", ""]))')
else
numbaver=$(python -c 'import random ; print(random.choice(["=0.56", "=0.57", "=0.58", ""]))')
numbaver=$(python -c 'import random ; print(random.choice(["=0.56", "=0.57", "=0.58", "=0.59", ""]))')
fi
# Only numba 0.59 support Python 3.12
if [[ ${{ startsWith(steps.pyver.outputs.selected, '3.12') }} == true ]] ; then
numbaver=$(python -c 'import random ; print(random.choice(["=0.59", ""]))')
fi
fmm=fast_matrix_market${fmmver}
awkward=awkward${akver}
if [[ ${{ contains(steps.pyver.outputs.selected, 'pypy') ||
startsWith(steps.pyver.outputs.selected, '3.12') }} == true ||
startsWith(steps.pyver.outputs.selected, '3.13') }} == true ||
( ${{ matrix.slowtask != 'notebooks'}} == true && (
( ${{ matrix.os == 'windows-latest' }} == true && $(python -c 'import random ; print(random.random() < .2)') == True ) ||
( ${{ matrix.os == 'windows-latest' }} == false && $(python -c 'import random ; print(random.random() < .4)') == True ))) ]]
then
# Some packages aren't available for pypy or Python 3.12; randomly otherwise (if not running notebooks)
# Some packages aren't available for pypy or Python 3.13; randomly otherwise (if not running notebooks)
echo "skipping numba"
numba=""
numbaver=NA
Expand All@@ -264,7 +271,7 @@ jobs:
pdver=""
yamlver=""
fi
elif [[ ${npver} == "=1.25" || ${npver} == "=1.26" ]] ; then
elif [[ ${npver} == "=2.0" ]] ; then
# Don't install numba for unsupported versions of numpy
numba=""
numbaver=NA
Expand DownExpand Up@@ -421,7 +428,7 @@ jobs:
coverage xml
coverage report --show-missing
- name: codecov
uses: codecov/codecov-action@v3
uses: codecov/codecov-action@v4
- name: Notebooks Execution check
if: matrix.slowtask == 'notebooks'
run: |
Expand Down
14 changes: 7 additions & 7 deletions.pre-commit-config.yaml
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Expand Up@@ -33,7 +33,7 @@ repos:
- id: name-tests-test
args: ["--pytest-test-first"]
- repo: https://github.com/abravalheri/validate-pyproject
rev: v0.15
rev: v0.16
hooks:
- id: validate-pyproject
name: Validate pyproject.toml
Expand DownExpand Up@@ -61,25 +61,25 @@ repos:
- id: auto-walrus
args: [--line-length, "100"]
- repo: https://github.com/psf/black
rev:23.12.1
rev:24.1.1
hooks:
- id: black
- id: black-jupyter
- repo: https://github.com/astral-sh/ruff-pre-commit
rev: v0.1.9
rev: v0.2.1
hooks:
- id: ruff
args: [--fix-only, --show-fixes]
# Let's keep `flake8` even though `ruff` does much of the same.
# `flake8-bugbear` and `flake8-simplify` have caught things missed by `ruff`.
- repo: https://github.com/PyCQA/flake8
rev:6.1.0
rev:7.0.0
hooks:
- id: flake8
additional_dependencies: &flake8_dependencies
# These versions need updated manually
- flake8==6.1.0
- flake8-bugbear==23.12.2
- flake8==7.0.0
- flake8-bugbear==24.1.17
- flake8-simplify==0.21.0
- repo: https://github.com/asottile/yesqa
rev: v1.5.0
Expand All@@ -94,7 +94,7 @@ repos:
additional_dependencies: [tomli]
files: ^(graphblas|docs)/
- repo: https://github.com/astral-sh/ruff-pre-commit
rev: v0.1.9
rev: v0.2.1
hooks:
- id: ruff
- repo: https://github.com/sphinx-contrib/sphinx-lint
Expand Down
1 change: 1 addition & 0 deletionsgraphblas/agg/__init__.py
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Expand Up@@ -73,6 +73,7 @@
# - bxnor monoid: even bits
# - bnor monoid: odd bits
"""

# All items are dynamically added by classes in core/operator/agg.py
# This module acts as a container of Aggregator instances
_deprecated = {}
Expand Down
1 change: 1 addition & 0 deletionsgraphblas/binary/numpy.py
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Expand Up@@ -5,6 +5,7 @@
https://numba.readthedocs.io/en/stable/reference/numpysupported.html#math-operations

"""

import numpy as _np

from .. import _STANDARD_OPERATOR_NAMES
Expand Down
1 change: 1 addition & 0 deletionsgraphblas/core/automethods.py
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Expand Up@@ -7,6 +7,7 @@
$ python -m graphblas.core.automethods

"""

from .. import config


Expand Down
3 changes: 1 addition & 2 deletionsgraphblas/core/dtypes.py
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Expand Up@@ -375,8 +375,7 @@ def lookup_dtype(key, value=None):


def unify(type1, type2, *, is_left_scalar=False, is_right_scalar=False):
"""
Returns a type that can hold both type1 and type2.
"""Returns a type that can hold both type1 and type2.

For example:
unify(INT32, INT64) -> INT64
Expand Down
8 changes: 4 additions & 4 deletionsgraphblas/core/expr.py
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Expand Up@@ -147,13 +147,13 @@ def py_indices(self):
return self.indices[0]._py_index()

def parse_indices(self, indices, shape):
"""
Returns
"""Returns
-------
[(rows, rowsize), (cols, colsize)] for Matrix
[(idx, idx_size)] for Vector

Within each tuple, if the index is of type int, the size will be None

"""
if len(shape) == 1:
if type(indices) is tuple:
Expand DownExpand Up@@ -312,8 +312,8 @@ def update(self, expr, **opts):
Updater(self.parent, opts=opts)._setitem(self.resolved_indexes, expr, is_submask=False)

def new(self, dtype=None, *, mask=None, input_mask=None, name=None, **opts):
"""
Force extraction of the indexes into a new object
"""Force extraction of the indexes into a new object.

dtype and mask are the only controllable parameters.
"""
if input_mask is not None:
Expand Down
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