Uh oh!
There was an error while loading.Please reload this page.
- Notifications
You must be signed in to change notification settings - Fork34.2k
Open
Description
Bug report
Bug description:
According to the Python stack trace from faulthandler, the problem comes from the_lazy_compile decorator in networkx:
I don't have a simple way to reproduce this unfortunately. I hit this running the scikit-image tests using a TSan-instrumented build of scikit-image and all its dependencies, including CPython.
goldbaum at Nathans-MBP in ~/Documents/scikit-image on use_pytest_run_parallel± TSAN_OPTIONS=halt_on_error=1 spin test --no-build "tests/skimage/graph/test_rag.py::test_rag_merge" -- --parallel-threads=4 -sv --skip-thread-unsafe=truepython3.15(44941,0x1f7caa240) malloc: nano zone abandoned due to inability to reserve vm space.$ export PYTHONPATH="/Users/goldbaum/Documents/scikit-image/build-install/usr/lib/python3.15t/site-packages"$ /Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/bin/python3.15 -P -c 'import skimage'python3.15(44994,0x1f7caa240) malloc: nano zone abandoned due to inability to reserve vm space.$ /Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/bin/python3.15 -P -m pytest --doctest-plus tests/skimage/graph/test_rag.py::test_rag_merge --parallel-threads=4 -sv --skip-thread-unsafe=truepython3.15(44996,0x1f7caa240) malloc: nano zone abandoned due to inability to reserve vm space.======================================================================================= test session starts =======================================================================================platform darwin -- Python 3.15.0a6+, pytest-9.0.2, pluggy-1.6.0 -- /Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/bin/python3.15cachedir: .pytest_cacherootdir: /Users/goldbaum/Documents/scikit-imageconfigfile: pyproject.tomlplugins: pretty-1.3.0, run-parallel-0.8.2, localserver-0.10.0, doctestplus-1.7.1, cov-7.0.0collected 1 itemCollected 1 items to run in paralleltests/skimage/graph/test_rag.py::test_rag_merge ==================WARNING: ThreadSanitizer: data race (pid=44996) Read of size 8 at 0x000110d59040 by thread T1: #0 func_set_code funcobject.c:667 (libpython3.15t.dylib:arm64+0xdca5c) #1 getset_set descrobject.c:250 (libpython3.15t.dylib:arm64+0xa5148) #2 _PyObject_GenericSetAttrWithDict object.c:2012 (libpython3.15t.dylib:arm64+0x144274) #3 PyObject_GenericSetAttr object.c:2083 (libpython3.15t.dylib:arm64+0x1449dc) #4 PyObject_SetAttr object.c:1528 (libpython3.15t.dylib:arm64+0x141858) #5 _PyEval_EvalFrameDefault generated_cases.c.h:10903 (libpython3.15t.dylib:arm64+0x29dc70) #6 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #7 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #8 _PyObject_VectorcallDictTstate call.c:135 (libpython3.15t.dylib:arm64+0x8db18) #9 _PyObject_Call_Prepend call.c:504 (libpython3.15t.dylib:arm64+0x8f52c) #10 slot_tp_new typeobject.c:11002 (libpython3.15t.dylib:arm64+0x1a3c74) #11 type_call typeobject.c:2460 (libpython3.15t.dylib:arm64+0x1971cc) #12 _PyObject_MakeTpCall call.c:242 (libpython3.15t.dylib:arm64+0x8dd70) #13 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e978) #14 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #15 _PyEval_EvalFrameDefault generated_cases.c.h:1817 (libpython3.15t.dylib:arm64+0x28bb2c) #16 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #17 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #18 method_vectorcall classobject.c:74 (libpython3.15t.dylib:arm64+0x931c8) #19 context_run context.c:727 (libpython3.15t.dylib:arm64+0x2d1110) #20 method_vectorcall_FASTCALL_KEYWORDS descrobject.c:421 (libpython3.15t.dylib:arm64+0xa6014) #21 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e8e4) #22 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #23 _PyEval_EvalFrameDefault generated_cases.c.h:1817 (libpython3.15t.dylib:arm64+0x28bb2c) #24 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #25 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #26 method_vectorcall classobject.c:74 (libpython3.15t.dylib:arm64+0x931c8) #27 _PyObject_Call call.c:348 (libpython3.15t.dylib:arm64+0x8eb98) #28 PyObject_Call call.c:373 (libpython3.15t.dylib:arm64+0x8ec10) #29 thread_run _threadmodule.c:387 (libpython3.15t.dylib:arm64+0x43a2e4) #30 pythread_wrapper thread_pthread.h:234 (libpython3.15t.dylib:arm64+0x37a748) Previous write of size 8 at 0x000110d59040 by thread T2: #0 func_set_code funcobject.c:682 (libpython3.15t.dylib:arm64+0xdcc78) #1 getset_set descrobject.c:250 (libpython3.15t.dylib:arm64+0xa5148) #2 _PyObject_GenericSetAttrWithDict object.c:2012 (libpython3.15t.dylib:arm64+0x144274) #3 PyObject_GenericSetAttr object.c:2083 (libpython3.15t.dylib:arm64+0x1449dc) #4 PyObject_SetAttr object.c:1528 (libpython3.15t.dylib:arm64+0x141858) #5 _PyEval_EvalFrameDefault generated_cases.c.h:10903 (libpython3.15t.dylib:arm64+0x29dc70) #6 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #7 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #8 _PyObject_VectorcallDictTstate call.c:135 (libpython3.15t.dylib:arm64+0x8db18) #9 _PyObject_Call_Prepend call.c:504 (libpython3.15t.dylib:arm64+0x8f52c) #10 slot_tp_new typeobject.c:11002 (libpython3.15t.dylib:arm64+0x1a3c74) #11 type_call typeobject.c:2460 (libpython3.15t.dylib:arm64+0x1971cc) #12 _PyObject_MakeTpCall call.c:242 (libpython3.15t.dylib:arm64+0x8dd70) #13 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e978) #14 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #15 _PyEval_EvalFrameDefault generated_cases.c.h:1817 (libpython3.15t.dylib:arm64+0x28bb2c) #16 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #17 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #18 method_vectorcall classobject.c:74 (libpython3.15t.dylib:arm64+0x931c8) #19 context_run context.c:727 (libpython3.15t.dylib:arm64+0x2d1110) #20 method_vectorcall_FASTCALL_KEYWORDS descrobject.c:421 (libpython3.15t.dylib:arm64+0xa6014) #21 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e8e4) #22 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #23 _PyEval_EvalFrameDefault generated_cases.c.h:1817 (libpython3.15t.dylib:arm64+0x28bb2c) #24 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #25 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #26 method_vectorcall classobject.c:74 (libpython3.15t.dylib:arm64+0x931c8) #27 _PyObject_Call call.c:348 (libpython3.15t.dylib:arm64+0x8eb98) #28 PyObject_Call call.c:373 (libpython3.15t.dylib:arm64+0x8ec10) #29 thread_run _threadmodule.c:387 (libpython3.15t.dylib:arm64+0x43a2e4) #30 pythread_wrapper thread_pthread.h:234 (libpython3.15t.dylib:arm64+0x37a748) Thread T1 (tid=375271174, running) created by main thread at: #0 pthread_create <null> (libclang_rt.tsan_osx_dynamic.dylib:arm64+0x30e28) #1 do_start_joinable_thread thread_pthread.h:281 (libpython3.15t.dylib:arm64+0x379964) #2 PyThread_start_joinable_thread thread_pthread.h:323 (libpython3.15t.dylib:arm64+0x37979c) #3 ThreadHandle_start _threadmodule.c:474 (libpython3.15t.dylib:arm64+0x43a0f0) #4 do_start_new_thread _threadmodule.c:1920 (libpython3.15t.dylib:arm64+0x439bbc) #5 thread_PyThread_start_joinable_thread _threadmodule.c:2043 (libpython3.15t.dylib:arm64+0x438c24) #6 cfunction_call methodobject.c:564 (libpython3.15t.dylib:arm64+0x1359e8) #7 _PyObject_MakeTpCall call.c:242 (libpython3.15t.dylib:arm64+0x8dd70) #8 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e978) #9 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #10 _PyEval_EvalFrameDefault generated_cases.c.h:3193 (libpython3.15t.dylib:arm64+0x28e8ec) #11 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #12 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #13 _PyObject_VectorcallDictTstate call.c:146 (libpython3.15t.dylib:arm64+0x8dad0) #14 _PyObject_Call_Prepend call.c:504 (libpython3.15t.dylib:arm64+0x8f52c) #15 call_method typeobject.c:3088 (libpython3.15t.dylib:arm64+0x1a3dec) #16 slot_tp_call typeobject.c:10744 (libpython3.15t.dylib:arm64+0x1a3b6c) #17 _PyObject_MakeTpCall call.c:242 (libpython3.15t.dylib:arm64+0x8dd70) #18 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e978) #19 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #20 _PyEval_EvalFrameDefault generated_cases.c.h:3193 (libpython3.15t.dylib:arm64+0x28e8ec) #21 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #22 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #23 _PyObject_VectorcallDictTstate call.c:146 (libpython3.15t.dylib:arm64+0x8dad0) #24 _PyObject_Call_Prepend call.c:504 (libpython3.15t.dylib:arm64+0x8f52c) #25 call_method typeobject.c:3088 (libpython3.15t.dylib:arm64+0x1a3dec) #26 slot_tp_call typeobject.c:10744 (libpython3.15t.dylib:arm64+0x1a3b6c) #27 _PyObject_Call call.c:361 (libpython3.15t.dylib:arm64+0x8eb58) #28 PyObject_Call call.c:373 (libpython3.15t.dylib:arm64+0x8ec10) #29 _PyEval_EvalFrameDefault generated_cases.c.h:2611 (libpython3.15t.dylib:arm64+0x28d4b8) #30 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #31 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #32 _PyObject_VectorcallDictTstate call.c:146 (libpython3.15t.dylib:arm64+0x8dad0) #33 _PyObject_Call_Prepend call.c:504 (libpython3.15t.dylib:arm64+0x8f52c) #34 call_method typeobject.c:3088 (libpython3.15t.dylib:arm64+0x1a3dec) #35 slot_tp_call typeobject.c:10744 (libpython3.15t.dylib:arm64+0x1a3b6c) #36 _PyObject_MakeTpCall call.c:242 (libpython3.15t.dylib:arm64+0x8dd70) #37 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e978) #38 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #39 _PyEval_EvalFrameDefault generated_cases.c.h:3193 (libpython3.15t.dylib:arm64+0x28e8ec) #40 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #41 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #42 _PyObject_VectorcallDictTstate call.c:146 (libpython3.15t.dylib:arm64+0x8dad0) #43 _PyObject_Call_Prepend call.c:504 (libpython3.15t.dylib:arm64+0x8f52c) #44 call_method typeobject.c:3088 (libpython3.15t.dylib:arm64+0x1a3dec) #45 slot_tp_call typeobject.c:10744 (libpython3.15t.dylib:arm64+0x1a3b6c) #46 _PyObject_MakeTpCall call.c:242 (libpython3.15t.dylib:arm64+0x8dd70) #47 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e978) #48 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #49 _PyEval_EvalFrameDefault generated_cases.c.h:3193 (libpython3.15t.dylib:arm64+0x28e8ec) #50 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #51 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #52 _PyObject_VectorcallDictTstate call.c:146 (libpython3.15t.dylib:arm64+0x8dad0) #53 _PyObject_Call_Prepend call.c:504 (libpython3.15t.dylib:arm64+0x8f52c) #54 call_method typeobject.c:3088 (libpython3.15t.dylib:arm64+0x1a3dec) #55 slot_tp_call typeobject.c:10744 (libpython3.15t.dylib:arm64+0x1a3b6c) #56 _PyObject_MakeTpCall call.c:242 (libpython3.15t.dylib:arm64+0x8dd70) #57 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e978) #58 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #59 _PyEval_EvalFrameDefault generated_cases.c.h:3193 (libpython3.15t.dylib:arm64+0x28e8ec) #60 PyEval_EvalCode ceval.c:680 (libpython3.15t.dylib:arm64+0x285a04) #61 builtin_exec bltinmodule.c.h:674 (libpython3.15t.dylib:arm64+0x27f654) #62 cfunction_vectorcall_FASTCALL_KEYWORDS methodobject.c:465 (libpython3.15t.dylib:arm64+0x134da0) #63 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e8e4) #64 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #65 _PyEval_EvalFrameDefault generated_cases.c.h:1817 (libpython3.15t.dylib:arm64+0x28bb2c) #66 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #67 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #68 _PyObject_Call call.c:348 (libpython3.15t.dylib:arm64+0x8eb98) #69 PyObject_Call call.c:373 (libpython3.15t.dylib:arm64+0x8ec10) #70 pymain_run_module main.c:353 (libpython3.15t.dylib:arm64+0x3925c0) #71 Py_RunMain main.c:772 (libpython3.15t.dylib:arm64+0x391bb4) #72 pymain_main main.c:802 (libpython3.15t.dylib:arm64+0x392364) #73 Py_BytesMain main.c:826 (libpython3.15t.dylib:arm64+0x392464) #74 main <null> (python3.15:arm64+0x100000788) Thread T2 (tid=375271175, running) created by main thread at: #0 pthread_create <null> (libclang_rt.tsan_osx_dynamic.dylib:arm64+0x30e28) #1 do_start_joinable_thread thread_pthread.h:281 (libpython3.15t.dylib:arm64+0x379964) #2 PyThread_start_joinable_thread thread_pthread.h:323 (libpython3.15t.dylib:arm64+0x37979c) #3 ThreadHandle_start _threadmodule.c:474 (libpython3.15t.dylib:arm64+0x43a0f0) #4 do_start_new_thread _threadmodule.c:1920 (libpython3.15t.dylib:arm64+0x439bbc) #5 thread_PyThread_start_joinable_thread _threadmodule.c:2043 (libpython3.15t.dylib:arm64+0x438c24) #6 cfunction_call methodobject.c:564 (libpython3.15t.dylib:arm64+0x1359e8) #7 _PyObject_MakeTpCall call.c:242 (libpython3.15t.dylib:arm64+0x8dd70) #8 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e978) #9 _Py_VectorCall_StackRefSteal ceval.c:727 (libpython3.15t.dylib:arm64+0x2861f8) #10 _PyEval_EvalFrameDefault generated_cases.c.h:3395 (libpython3.15t.dylib:arm64+0x28efec) #11 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #12 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #13 _PyObject_VectorcallDictTstate call.c:146 (libpython3.15t.dylib:arm64+0x8dad0) #14 _PyObject_Call_Prepend call.c:504 (libpython3.15t.dylib:arm64+0x8f52c) #15 call_method typeobject.c:3088 (libpython3.15t.dylib:arm64+0x1a3dec) #16 slot_tp_call typeobject.c:10744 (libpython3.15t.dylib:arm64+0x1a3b6c) #17 _PyObject_MakeTpCall call.c:242 (libpython3.15t.dylib:arm64+0x8dd70) #18 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e978) #19 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #20 _PyEval_EvalFrameDefault generated_cases.c.h:3193 (libpython3.15t.dylib:arm64+0x28e8ec) #21 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #22 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #23 _PyObject_VectorcallDictTstate call.c:146 (libpython3.15t.dylib:arm64+0x8dad0) #24 _PyObject_Call_Prepend call.c:504 (libpython3.15t.dylib:arm64+0x8f52c) #25 call_method typeobject.c:3088 (libpython3.15t.dylib:arm64+0x1a3dec) #26 slot_tp_call typeobject.c:10744 (libpython3.15t.dylib:arm64+0x1a3b6c) #27 _PyObject_Call call.c:361 (libpython3.15t.dylib:arm64+0x8eb58) #28 PyObject_Call call.c:373 (libpython3.15t.dylib:arm64+0x8ec10) #29 _PyEval_EvalFrameDefault generated_cases.c.h:2611 (libpython3.15t.dylib:arm64+0x28d4b8) #30 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #31 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #32 _PyObject_VectorcallDictTstate call.c:146 (libpython3.15t.dylib:arm64+0x8dad0) #33 _PyObject_Call_Prepend call.c:504 (libpython3.15t.dylib:arm64+0x8f52c) #34 call_method typeobject.c:3088 (libpython3.15t.dylib:arm64+0x1a3dec) #35 slot_tp_call typeobject.c:10744 (libpython3.15t.dylib:arm64+0x1a3b6c) #36 _PyObject_MakeTpCall call.c:242 (libpython3.15t.dylib:arm64+0x8dd70) #37 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e978) #38 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #39 _PyEval_EvalFrameDefault generated_cases.c.h:3193 (libpython3.15t.dylib:arm64+0x28e8ec) #40 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #41 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #42 _PyObject_VectorcallDictTstate call.c:146 (libpython3.15t.dylib:arm64+0x8dad0) #43 _PyObject_Call_Prepend call.c:504 (libpython3.15t.dylib:arm64+0x8f52c) #44 call_method typeobject.c:3088 (libpython3.15t.dylib:arm64+0x1a3dec) #45 slot_tp_call typeobject.c:10744 (libpython3.15t.dylib:arm64+0x1a3b6c) #46 _PyObject_MakeTpCall call.c:242 (libpython3.15t.dylib:arm64+0x8dd70) #47 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e978) #48 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #49 _PyEval_EvalFrameDefault generated_cases.c.h:3193 (libpython3.15t.dylib:arm64+0x28e8ec) #50 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #51 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #52 _PyObject_VectorcallDictTstate call.c:146 (libpython3.15t.dylib:arm64+0x8dad0) #53 _PyObject_Call_Prepend call.c:504 (libpython3.15t.dylib:arm64+0x8f52c) #54 call_method typeobject.c:3088 (libpython3.15t.dylib:arm64+0x1a3dec) #55 slot_tp_call typeobject.c:10744 (libpython3.15t.dylib:arm64+0x1a3b6c) #56 _PyObject_MakeTpCall call.c:242 (libpython3.15t.dylib:arm64+0x8dd70) #57 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e978) #58 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #59 _PyEval_EvalFrameDefault generated_cases.c.h:3193 (libpython3.15t.dylib:arm64+0x28e8ec) #60 PyEval_EvalCode ceval.c:680 (libpython3.15t.dylib:arm64+0x285a04) #61 builtin_exec bltinmodule.c.h:674 (libpython3.15t.dylib:arm64+0x27f654) #62 cfunction_vectorcall_FASTCALL_KEYWORDS methodobject.c:465 (libpython3.15t.dylib:arm64+0x134da0) #63 PyObject_Vectorcall call.c:327 (libpython3.15t.dylib:arm64+0x8e8e4) #64 _Py_VectorCallInstrumentation_StackRefSteal ceval.c:769 (libpython3.15t.dylib:arm64+0x286930) #65 _PyEval_EvalFrameDefault generated_cases.c.h:1817 (libpython3.15t.dylib:arm64+0x28bb2c) #66 _PyEval_Vector ceval.c:2132 (libpython3.15t.dylib:arm64+0x285e2c) #67 _PyFunction_Vectorcall call.c (libpython3.15t.dylib:arm64+0x8ef28) #68 _PyObject_Call call.c:348 (libpython3.15t.dylib:arm64+0x8eb98) #69 PyObject_Call call.c:373 (libpython3.15t.dylib:arm64+0x8ec10) #70 pymain_run_module main.c:353 (libpython3.15t.dylib:arm64+0x3925c0) #71 Py_RunMain main.c:772 (libpython3.15t.dylib:arm64+0x391bb4) #72 pymain_main main.c:802 (libpython3.15t.dylib:arm64+0x392364) #73 Py_BytesMain main.c:826 (libpython3.15t.dylib:arm64+0x392464) #74 main <null> (python3.15:arm64+0x100000788)SUMMARY: ThreadSanitizer: data race funcobject.c:667 in func_set_code==================Fatal Python error: Aborted<Cannot show all threads while the GIL is disabled>Stack (most recent call first): File "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/python3.15t/site-packages/networkx/utils/decorators.py", line 757 in _lazy_compile File "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/python3.15t/site-packages/networkx/utils/decorators.py", line 784 in func File "/Users/goldbaum/Documents/scikit-image/tests/skimage/graph/test_rag.py", line 23 in test_rag_merge File "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/python3.15t/site-packages/pytest_run_parallel/plugin.py", line 80 in closure File "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/python3.15t/threading.py", line 1017 in run File "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/python3.15t/threading.py", line 1075 in _bootstrap_inner File "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/python3.15t/threading.py", line 1037 in _bootstrapCurrent thread's C stack trace (most recent call first): Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at _Py_DumpStack+0x54 [0x103e3e0a4] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at faulthandler_fatal_error+0x330 [0x103e68ab4] Binary file "/opt/homebrew/Cellar/llvm/21.1.7/lib/clang/21/lib/darwin/libclang_rt.tsan_osx_dynamic.dylib", at _ZN6__tsanL21CallUserSignalHandlerEPNS_11ThreadStateEbbiPN11__sanitizer23__sanitizer_siginfo_padEPv+0x104 [0x1043a6538] Binary file "/opt/homebrew/Cellar/llvm/21.1.7/lib/clang/21/lib/darwin/libclang_rt.tsan_osx_dynamic.dylib", at _Z10sighandleriPN11__sanitizer23__sanitizer_siginfo_padEPv+0x1c0 [0x1043a69f4] Binary file "/usr/lib/system/libsystem_platform.dylib", at _sigtramp+0x38 [0x189d4d6a4] Binary file "/usr/lib/system/libsystem_pthread.dylib", at pthread_kill+0x128 [0x189d13848] Binary file "/opt/homebrew/Cellar/llvm/21.1.7/lib/clang/21/lib/darwin/libclang_rt.tsan_osx_dynamic.dylib", at wrap_pthread_kill+0x158 [0x1043a70e8] Binary file "/usr/lib/system/libsystem_c.dylib", at abort+0x7c [0x189c1c9e4] Binary file "/opt/homebrew/Cellar/llvm/21.1.7/lib/clang/21/lib/darwin/libclang_rt.tsan_osx_dynamic.dylib", at _ZN11__sanitizer6AtexitEPFvvE+0x0 [0x104388784] Binary file "/opt/homebrew/Cellar/llvm/21.1.7/lib/clang/21/lib/darwin/libclang_rt.tsan_osx_dynamic.dylib", at _ZN11__sanitizer3DieEv+0x68 [0x104387ca4] Binary file "/opt/homebrew/Cellar/llvm/21.1.7/lib/clang/21/lib/darwin/libclang_rt.tsan_osx_dynamic.dylib", at _ZN6__tsan12OutputReportEPNS_11ThreadStateERKNS_12ScopedReportE+0x410 [0x1043ee438] Binary file "/opt/homebrew/Cellar/llvm/21.1.7/lib/clang/21/lib/darwin/libclang_rt.tsan_osx_dynamic.dylib", at _ZN6__tsan10ReportRaceEPNS_11ThreadStateEPNS_9RawShadowENS_6ShadowES4_m+0xb84 [0x1043ef224] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at func_set_code+0xf8 [0x103b9ca60] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at getset_set+0x90 [0x103b6514c] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at _PyObject_GenericSetAttrWithDict+0x20c [0x103c04278] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at PyObject_GenericSetAttr+0x3c [0x103c049e0] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at PyObject_SetAttr+0x1c8 [0x103c0185c] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at _PyEval_EvalFrameDefault+0x158ac [0x103d5dc74] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at _PyEval_Vector+0x3c0 [0x103d45e30] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at _PyFunction_Vectorcall+0x94 [0x103b4ef2c] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at _PyObject_VectorcallDictTstate+0x108 [0x103b4db1c] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at _PyObject_Call_Prepend+0xb4 [0x103b4f530] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at slot_tp_new+0xec [0x103c63c78] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at type_call+0x80 [0x103c571d0] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at _PyObject_MakeTpCall+0x1a4 [0x103b4dd74] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at PyObject_Vectorcall+0x130 [0x103b4e97c] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at _Py_VectorCallInstrumentation_StackRefSteal+0x220 [0x103d46934] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at _PyEval_EvalFrameDefault+0x3768 [0x103d4bb30] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at _PyEval_Vector+0x3c0 [0x103d45e30] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at _PyFunction_Vectorcall+0x94 [0x103b4ef2c] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at method_vectorcall+0x1b8 [0x103b531cc] Binary file "/Users/goldbaum/.pyenv/versions/3.15t-dev-tsan/lib/libpython3.15t.dylib", at context_run+0xc4 [0x103d91114]CPython versions tested on:
CPython main branch
Operating systems tested on:
macOS