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A Python library implementing the Data Access Protocol (DAP, aka OPeNDAP).
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pydap/pydap
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pydap is an open-source implementation of the OPeNDAP protocol, written from scratch in pure Python. You can usepydap
to access scientific data available on the many OPeNDAP servers publicly-available through the internet. Because pydap supports remote and lazy evaluation, you can access the data without having to download it; Instead, you work with special array and iterable objects that download data on-the-fly as necessary, saving bandwidth and time. The module also comes with a robust-but-lightweight OPeNDAP server, implemented as a WSGI application.
Originally developed in the 2000s,pydap
is one of the oldest open-source Python projects available and is routinely developed and maintained by the OPeNDAP community at large. In addition,pydap
is a long-recognized backend engine (and dependency) forxarray and chances are you have usedpydap
in the past without knowing it.
pydap
is a lightweight python package that you can use in either of the two modalities: a client and as a server. You can install the latest version usingpip. Afterinstalling pip you can installpydap
with this command:
$ pip install pydap
This will install pydap together with all the required dependencies.
pydap
is also available throughAnaconda. Below we installpydap
and its required dependencies, along with common additional packages in a fresh conda environment named"pydap"
:
$ conda create -n pydap -c conda-forge python=3.11 pydap numpy jupyterlab ipython netCDF4 scipy matplotlib
Now you simply activate the pydap environment:
$ conda activate pydap
Note
If you havemamba
installed, you can replaceconda
in the commands withmamba
.
You can now use pydap as a client and open any remotely served dataset, andpydap
will download the accessed data on-the-fly as needed. For example considerthis dataset currently hosted on OPeNDAP's Hyrax data server
frompydap.clientimportopen_urlpyds=open_url('http://test.opendap.org:8080/opendap/catalog/ghrsst/20210102090000-JPL-L4_GHRSST-SSTfnd-MUR-GLOB-v02.0-fv04.1.nc',protocol='dap4')pyds.tree()
.20210102090000-JPL-L4_GHRSST-SSTfnd-MUR-GLOB-v02.0-fv04.1.nc ├──time ├──lat ├──lon ├──analysed_sst ├──analysis_error ├──mask ├──sea_ice_fraction ├──dt_1km_data └──sst_anomaly
pyds['sst_anomaly'].shape
(1,17999,36000)
Note
In the example above, no data was downloaded, it was all lazily evaluated using OPeNDAP's DMR (DAP4) metadata representation. For more information, please check the documentation onusing pydap as a client.
pydap
also comes with a simple server, implemented as aWSGI application. To use it, you first need to install the server and optionally a data handler:
$ pip install"pydap[server,netcdf]"
This will install the necessary dependencies for running pydap as a server, along with extra dependencies for handlingnetCDF4 dataset. Now create a directory for your server data.
To run the server just issue the command:
$ pydap --data ./myserver/data/ --port 8001 --workers 4 --threads 4
This will start a standalone server running on the defaulthttp://localhost:8001/, serving netCDF files from./myserver/data/
Since the server uses theWSGI standard, pydap uses by default one (1) worker and one (1) thread, but these can be defined by the user like in the case above (four (4) workers and four (4) threads).pydap
can also easily be run behind Apache.
Theserver documentation has more information on how to better deploypydap
.
For more information, seethe pydap documentation.
If you need any help withpydap
, open an issue in this repository. You can also email themailing list. Finally, if you have a broader OPeNDAP access question, you can reach the OPeNDAP team on theOPeNDAP Discourse!
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A Python library implementing the Data Access Protocol (DAP, aka OPeNDAP).
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