- Notifications
You must be signed in to change notification settings - Fork0
A utility for loading data from repositories of BEL documents
License
NotificationsYou must be signed in to change notification settings
pybel/bel-repository
Folders and files
| Name | Name | Last commit message | Last commit date | |
|---|---|---|---|---|
Repository files navigation
A utility for loading data from repositories of BEL documents with PyBEL[1].
bel_repository can be installed from PyPI with the following command:
$ pip install bel-repository
The latest version can be installed from GitHub with:
$ pip install git+https://github.com/pybel/bel-repository.git
fromtypingimportMappingfrombel_repositoryimportBELRepositoryfrompybelimportBELGraph# Build a repository by giving a folderbel_repository=BELRepository('/path/to/folder/with/bel/')# Get a mapping from paths to graphsgraphs:Mapping[str,BELGraph]=bel_repository.get_graphs()# Get a combine graphgraph:BELGraph=bel_repository.get_graph()
Each of these repositories has BEL content that can be pip installed:
- https://github.com/cthoyt/selventa-knowledge/
- https://github.com/pharmacome/conib
- https://github.com/hemekg/hemekg
- https://github.com/covid19kg/covid19kg
- https://github.com/neurommsig-epilepsy/neurommsig-epilepsy
More publicly available BEL content can be found in the listing inthis blog post.
| [1] | Hoyt, C. T.,et al. (2017).PyBEL: a computational framework for Biological ExpressionLanguage. Bioinformatics (Oxford, England), 34(4), 703–704. |
About
A utility for loading data from repositories of BEL documents
Topics
Resources
License
Stars
Watchers
Forks
Packages0
No packages published