I get this warning inCI:

top-level default_stages uses deprecated stage names (commit, push) which will be removed in a future version.  run: `pre-commit migrate-config` to automatically fix this.

Yet runningpre-commit migrate-config in my repository doesn't have any effect:

$pre-commit migrate-configConfiguration is already migrated.$

I get this warning inCI:

top-level default_stages uses deprecated stage names (commit, push) which will be removed in a future version.  run: `pre-commit migrate-config` to automatically fix this.

Screen capture of pre-commit.ci
Yet runningpre-commit migrate-config in my repository doesn't have any effect:

$ pre-commit migrate-configConfiguration is already migrated.$

obviously you're not using a new enough pre-commit version

$pre-commit --versionpre-commit 4.0.1$

Couldpre-commit.ci be using newer code than the latest released version ofpre-commit?

show your configuration?

https://github.com/zarr-developers/numcodecs/blob/8edd3f96d2703df070f70bd224b3707ec4d68c4e/.pre-commit-config.yaml

The part that needs to be updated is:

default_stages:[commit, push]

works for me

$pre-commit migrate-configConfiguration has been migrated.$git diffdiff --git a/.pre-commit-config.yaml b/.pre-commit-config.yamlindex dd04f38..2835f59 100644--- a/.pre-commit-config.yaml+++ b/.pre-commit-config.yaml@@ -3,7 +3,7 @@ ci:   autoupdate_commit_msg: "chore: update pre-commit hooks"   autofix_commit_msg: "style: pre-commit fixes"   autofix_prs: false-default_stages: [commit, push]+default_stages: [pre-commit, pre-push] default_language_version:   python: python3 repos:

$grep default_stages .pre-commit-config.yamldefault_stages: [commit, push]$ $pipx install pre-commit  installed package pre-commit 4.0.1, installed using Python 3.10.12  These apps are now globally available    - pre-commitdone! ✨ 🌟 ✨$ $pre-commit --versionpre-commit 4.0.1$ $pre-commit migrate-configConfiguration has been migrated.$ $grep default_stages .pre-commit-config.yamldefault_stages: [pre-commit, pre-push]$

I'll retry on my computer at work tomorrow, and let you know. Either I did something wrong, or this an effect of a Linux kernel or system issue that breaks my workstation in very strange ways since it was upgraded from Ubuntu 22.04 to Ubuntu 24.04.

almost certainly it was an old version of pre-commit

I don't think it is an old version (pre-commit installed with pipx just like at home). Rather, my workstation is plagued by mysterious I/O problems since the Ubuntu 24.04 upgrade, see for exampleprefix-dev/rattler-build#1045 (comment).

I don't necessarily trust pipx to do what you want personally

My workstation has been reinstalled by IT. I cannot reproduce the issue any more. Sorry about the noise.