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1. ebi-gene-expression-group/bulk-recalculationsebi-gene-expression-group/bulk-recalculationsPublic

   Snakemake workflow for new experiments processing, reprocessing and recalculations steps

   Python 1

2. ebi-gene-expression-group/bioconductor-ExpressionAtlasebi-gene-expression-group/bioconductor-ExpressionAtlasPublic

   Download datasets from EMBL-EBI Expression Atlas

   R 1 1

3. ebi-gene-expression-group/atlas-ca-analysisebi-gene-expression-group/atlas-ca-analysisPublic

   Atlas analysis for controlled-access bulk datasets, such as EGA

   Shell

4. ebi-gene-expression-group/ega_downloaderebi-gene-expression-group/ega_downloaderPublic

   Nextflow wf for downloading and arranging EGA datasets before analysis

   R

5. fCCACfCCACPublic

   Bioconductor package - functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets

   R

6. AMRISSAMRISSPublic

   Scripts for the analysis of Antimicrobial Resistance (AMR) at International Space Station (ISS) surface microbiomes

   R 8 1