phylogeography

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SPREADv1SPREADv1Public
Spatial Phylogenetic Reconstruction of Evolutionary Dynamics
Java 20 9
spreadspreadPublic
Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time-animated visualization.
Clojure 18
SpreaD3SpreaD3Public
Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
Java 15 7
HIVmixedEffectsClockHIVmixedEffectsClockPublic
A mixed effects clock model application to HIV-1 groupM
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travelHistorytravelHistoryPublic
Repo associated with a manuscript on including travel history in Bayesian phylogeographic inference
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d3-rendererd3-rendererPublic
Renderer for SpreaD3 JSON files.
JavaScript 1 1

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Showing 10 of 13 repositories

spread Public
Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time-animated visualization.
phylogeography/spread’s past year of commit activity
Clojure 18MIT0 12 2 UpdatedJan 23, 2025
GLEAM-phylogeography Public
This repo contains the analyses files for a study that connects the GLEAM (Global Epidemic and Mobility) model to phylogeography
phylogeography/GLEAM-phylogeography’s past year of commit activity
1MIT0 0 0 UpdatedNov 12, 2024
sarbecovirus_phylogeography Public
phylogeography/sarbecovirus_phylogeography’s past year of commit activity
10 1 0 UpdatedFeb 9, 2024
SpreaD3 Public
Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
phylogeography/SpreaD3’s past year of commit activity
Java 15LGPL-3.0 7 19 1 UpdatedApr 28, 2023
SARS-CoV-2_EUR_PHYLOGEOGRAPHY Public
phylogeography/SARS-CoV-2_EUR_PHYLOGEOGRAPHY’s past year of commit activity
10 0 0 UpdatedMay 30, 2021
travelHistory Public
Repo associated with a manuscript on including travel history in Bayesian phylogeographic inference
phylogeography/travelHistory’s past year of commit activity
20 0 0 UpdatedSep 13, 2020
HIVmixedEffectsClock Public
A mixed effects clock model application to HIV-1 groupM
phylogeography/HIVmixedEffectsClock’s past year of commit activity
30 1 0 UpdatedNov 23, 2019
SPREADv1 Public
Spatial Phylogenetic Reconstruction of Evolutionary Dynamics
phylogeography/SPREADv1’s past year of commit activity
Java 20LGPL-3.0 9 5 1 UpdatedJan 13, 2019
spreaD3-web Public
REST Web Services to spreaD3
phylogeography/spreaD3-web’s past year of commit activity
Java0 1 0 0 UpdatedJun 12, 2017
spreaD3-web-ui Public
User interface for Spread3-web.
phylogeography/spreaD3-web-ui’s past year of commit activity
Clojure00 0 0 UpdatedJun 7, 2017