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Import Human Gene Nomenclature
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The goal of{hgnc} is to easily importHuman GeneNomenclature into R.
Install{hgnc} from CRAN:
install.packages("hgnc")To import the latest HGNC gene data set in tabular format directly intomemory as a tibble do as follows:
library(hgnc)# Check the date of HGNC last updatelast_update()#> [1] "2025-06-17 11:10:30 UTC"# Import the data set in tidy tabular format(hgnc_dataset<- import_hgnc_dataset())#> # A tibble: 44,117 × 55#> hgnc_id hgnc_id2 symbol name locus_group locus_type status location#> <chr> <int> <chr> <chr> <chr> <chr> <chr> <chr>#> 1 HGNC:5 5 A1BG alpha-1… protein-co… gene with… Appro… 19q13.43#> 2 HGNC:37133 37133 A1BG-AS1 A1BG an… non-coding… RNA, long… Appro… 19q13.43#> 3 HGNC:24086 24086 A1CF APOBEC1… protein-co… gene with… Appro… 10q11.23#> 4 HGNC:7 7 A2M alpha-2… protein-co… gene with… Appro… 12p13.31#> 5 HGNC:27057 27057 A2M-AS1 A2M ant… non-coding… RNA, long… Appro… 12p13.31#> 6 HGNC:23336 23336 A2ML1 alpha-2… protein-co… gene with… Appro… 12p13.31#> 7 HGNC:41022 41022 A2ML1-AS1 A2ML1 a… non-coding… RNA, long… Appro… 12p13.31#> 8 HGNC:41523 41523 A2ML1-AS2 A2ML1 a… non-coding… RNA, long… Appro… 12p13.31#> 9 HGNC:8 8 A2MP1 alpha-2… pseudogene pseudogene Appro… 12p13.31#> 10 HGNC:30005 30005 A3GALT2 alpha 1… protein-co… gene with… Appro… 1p35.1#> # ℹ 44,107 more rows#> # ℹ 47 more variables: location_sortable <chr>, alias_symbol <list>,#> # alias_name <list>, prev_symbol <list>, prev_name <list>, gene_group <list>,#> # gene_group_id <list>, date_approved_reserved <date>,#> # date_symbol_changed <date>, date_name_changed <date>, date_modified <date>,#> # entrez_id <chr>, ensembl_gene_id <chr>, vega_id <chr>, ucsc_id <chr>,#> # ena <list>, refseq_accession <list>, ccds_id <list>, uniprot_ids <list>, …
Learn more about this package by reading the documentation athttps://www.pattern.institute/hgnc/.
To cite HGNC nomenclature resources use:
- Tweedie S, Braschi B, Gray KA, Jones TEM, Seal RL, Yates B, BrufordEA.Genenames.org: the HGNC and VGNC resources in 2021. NucleicAcids Res. 49, D939–D946 (2021). doi:10.1093/nar/gkaa980
To cite data within the database use the following format:
- HGNC Database, HUGO Gene Nomenclature Committee (HGNC), EuropeanMolecular Biology Laboratory, European Bioinformatics Institute(EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD,United Kingdomwww.genenames.org.
Please include the month and year you retrieved the data cited.
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Import Human Gene Nomenclature
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