Movatterモバイル変換

[0]ホーム
URL:

Skip to content

Navigation Menu

Sign in
Appearance settings

Search code, repositories, users, issues, pull requests...

Provide feedback

We read every piece of feedback, and take your input very seriously.

Saved searches

Use saved searches to filter your results more quickly

 Sign up
Appearance settings
NotificationsYou must be signed in to change notification settings

openUC2/ImSwitchConfig

Repository files navigation

This repository will help you setting up theJSON-files for the UC2-specific devices, namely:

  • Allied Vision Alvium Camera / Vimba
  • Daheng Imaging Machine Vision
  • UC2 electronics (ESP32-based)
    • XYZ Stage
    • Laser
    • LED
    • LED Matrix
  • Raspberry Pi camera (experimental)
  • ESP32 camera

More information can be found in the original documentation of ImSwitch can be found in theREADTHEDOCS of IMSWITCH

Setting up the current ImSwitch Config

Available Modules

The file under$USER$/Documents/ImSwitchConfig/config/modules.json (Windows) and/User/$username$/ImSwitchConfig/config/modules.json (Mac/Linux) may look like this:

{"enabled": ["imcontrol","imscripting","imnotebook"    ]}

These are the available modules that will be loaded on startup of imswitch. ImControl is the general control GUI, ImScripting is the python interpreter to control the system, ImNotebook launches a jupyter server that can be used to control ImSwitch inside imswitch using Jupyter.

Setup Configuration

The file under$USER$/Documents/ImSwitchConfig/config/imcontrol_options.json (Windows) and/User/$username$/ImSwitchConfig/config/imcontrol_options.json (Mac/Linux) may look like this:

{"setupFileName":"example_virtual_microscope.json","recording": {"outputFolder":"./ImSwitch/ImSwitch/recordings","includeDateInOutputFolder":true    },"watcher": {"outputFolder":"/Users/bene/ImSwitchConfig/scripts"    }}

The entry"setupFileName": "example_virtual_microscope.json", determines the current active configuration file that defines the hardware configuration (E.g. camera, positioner.. see below). This file is stored under..imcontrol_setups.

Setting up this repository

ImSwitch will create a folder that stores all settings in:

  • Windows$USER$/Documents/ImSwitchConfig
  • MAC/User/$username$/ImSwitchConfig

There you will find several subfolders:

configimcontrol_setupsimcontrol_slmscripts

You can download this repo and replace all files in this folder. Alternatively, you can clone it and keep it up to date with upcoming configurations.

UC2 configurations

A recent sample configuration is for example theimcontrol_setups/example_uc2_multicolour.json. It controls an ESP32-driven XYZ stage, hosts 2 lasers and has a Daheng Vision camera:

{"rs232devices": {"ESP32": {"managerName":"ESP32Manager","managerProperties": {"host_":"192.168.43.129","serialport_windows":"COM3","serialport":"/dev/cu./dev/cu.SLAB_USBtoUART"      }    }  },"positioners": {"ESP32Stage": {"managerName":"ESP32StageManager","managerProperties": {"rs232device":"ESP32"        },"axes": ["X","Y","Z"],"forScanning":true,"forPositioning":true    }},"lasers": {"488 Laser": {"analogChannel":null,"digitalLine":null,"managerName":"ESP32LEDLaserManager","managerProperties": {"rs232device":"ESP32","channel_index":"B","filter_change":true    },"wavelength":488,"valueRangeMin":0,"valueRangeMax":32768},"635 Laser": {"analogChannel":null,"digitalLine":null,"managerName":"ESP32LEDLaserManager","managerProperties": {"rs232device":"ESP32","channel_index":"R","filter_change":true  },"wavelength":635,"valueRangeMin":0,"valueRangeMax":32768},"LED": {"analogChannel":null,"digitalLine":null,"managerName":"ESP32LEDLaserManager","managerProperties": {"rs232device":"ESP32","channel_index":"W","filter_change":false  },"wavelength":635,"valueRangeMin":0,"valueRangeMax":32768}},"detectors": {"WidefieldCamera": {"analogChannel":null,"digitalLine":null,"managerName":"GXPIPYManager","managerProperties": {"cameraListIndex":1,"gxipycam": {"exposure":0,"gain":0,"blacklevel":100,"image_width":1000,"image_height":1000      }    },"forAcquisition":true,"forFocusLock":true  }},"rois": {"Full chip": {"x":600,"y":600,"w":1200,"h":1200  }},"availableWidgets": ["Settings","View","Recording","Image","Laser","Positioner","Autofocus"  ],"autofocus": {"camera":"WidefieldCamera","positioner":"ESP32Stage","updateFreq":10,"frameCropx":780,"frameCropy":400,"frameCropw":500,"frameCroph":100  }}

Explanation:

RS232 Manager

Since multiple devices (stage, laser, filterswitcher) are connected to a single USB/Serial device (ESP32), we have to write a wrapper that connects to all individual devices. This is calledrs232devices:

"rs232devices": {"ESP32": {"managerName":"ESP32Manager","managerProperties": {"host_":"192.168.43.129","serialport_windows":"COM3","serialport":"/dev/cu./dev/cu.SLAB_USBtoUART"      }    }  },

Theserialport specifies the correct physical address of the device and has to be adapted. Alternatively, one can specify thehost if you want to connect over Wifi.Theoretically, if everything goes right, ImSwitch is smart enough to detect the ESP32 on its own. Thhe name for this device (i.e. internal reference) isESP32 and will be reused by all external components.

Thefirmware can be foundhere.

Stage

All devices refer to thers232device defined earlier:

"positioners": {"ESP32Stage": {"managerName":"ESP32StageManager","managerProperties": {"rs232device":"ESP32"        },"axes": ["X","Y","Z"],"forScanning":true,"forPositioning":true    }},

This defines the x-y-z axis and will control theESP32 device.forScanning - states that the stage is used for a potential Multiwellplate scanner and`forPositioning - states that it can be used as a normal positining device.

Laser

The name635 Laser is chosen for the red laser.filter_change is an option to rotate the motor that moves the filter.Thechannel_index (e.g. R, G, B) state the different colours / channels. (TODO: perhaps this is now 1,2,3).

"635 Laser": {"analogChannel":null,"digitalLine":null,"managerName":"ESP32LEDLaserManager","managerProperties": {"rs232device":"ESP32","channel_index":"R","filter_change":true  },"wavelength":635,"valueRangeMin":0,"valueRangeMax":32768},

Camera

Example for the Daheng Imaging camera:

"detectors": {"WidefieldCamera": {"analogChannel":null,"digitalLine":null,"managerName":"GXPIPYManager","managerProperties": {"cameraListIndex":1,"gxipycam": {"exposure":0,"gain":0,"blacklevel":100,"image_width":1000,"image_height":1000      }    },"forAcquisition":true,"forFocusLock":true  }},

More information coming soon!

If you have any questions, please file an issue :-)

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Contributors3

  •  
  •  
  •  
[8]ページ先頭
©2009-2025 Movatter.jp