Open Microscopy Environment
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We've verified that the organizationome controls the domains:
- www.openmicroscopy.org
- lists.openmicroscopy.org.uk
OME is a consortium of universities, research labs, industry and developersproducing open-source software and format standards for microscopy data. If you are working with bioimaging datalikethese:
 |  |  |
then you may already be using something from OME!(You can find out more about these images onhttps://idr.openmicroscopy.org.)
- OME Model
At the core of everything we do is the specification of an open data model, a vocabulary, that lets software components and users exchange bioimaging (meta)data.
- Bio-Formats
is a library translate hundreds of bioimaging formats into the common model.
- OMERO
is a data management platform that uses Bio-Formats to serve all supported formats to your users, through:
- theOMERO.web
client,
- theOMERO.insight
Java client, or
- the OMERO.cli written using theOMERO.py
API.
- The are alsoansible roles anddocker imagesavailable to help you manage your OMERO server.
- theOMERO.web
- OME-NGFF, next-generation file formats. See:
- ngff
for the specification
- ome-zarr-py
for the Python implementation
- ngff
Find more ways to get started underhttps://www.openmicroscopy.org/explore!
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- openmicroscopy
openmicroscopy PublicOME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities,…
- bioformats
bioformats PublicBio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Pub…
- omero-deployment-examples
omero-deployment-examples PublicExamples playbooks for installing OMERO with Ansible and Docker
- omero-figure
omero-figure PublicAn OMERO.web app for creating Figures from images in OMERO
Repositories
- ome-zarr-py Public
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
ome/ome-zarr-py’s past year of commit activity - bioimage-latency-benchmark Public
ome/bioimage-latency-benchmark’s past year of commit activity - omero-cli-zarr Public
ome/omero-cli-zarr’s past year of commit activity