Commite624a70

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Merge pull requestmiykael#170 from effigies/fix/handle_copyfiles

FIX: Path location is updated when symlinked

2 parentse78e323 +bfee0e7 commite624a70Copy full SHA for e624a70

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Lines changed: 4 additions & 2 deletions

Original file line number	Diff line number	Diff line change
`@@ -170,8 +170,10 @@`
`170`	`170`	`"metadata": {},`
`171`	`171`	`"outputs": [],`
`172`	`172`	`"source": [`
	`173`	`+"in_file = '/data/ds000114/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz'\n",`
	`174`	`+"\n",`
`173`	`175`	`"# Specify node inputs\n",`
`174`		`-"bet.inputs.in_file ='/data/ds000114/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz'\n",`
	`176`	`+"bet.inputs.in_file =in_file\n",`
`175`	`177`	`"bet.inputs.out_file = '/output/node_T1w_bet.nii.gz'"`
`176`	`178`	`]`
`177`	`179`	`},`
`@@ -200,7 +202,7 @@`
`200`	`202`	`"from nilearn.plotting import plot_anat\n",`
`201`	`203`	`"%matplotlib inline\n",`
`202`	`204`	`"import matplotlib.pyplot as plt\n",`
`203`		`-"plot_anat(bet.inputs.in_file, title='BET input', cut_coords=(10,10,10),\n",`
	`205`	`+"plot_anat(in_file, title='BET input', cut_coords=(10,10,10),\n",`
`204`	`206`	`" display_mode='ortho', dim=-1, draw_cross=False, annotate=False);\n",`
`205`	`207`	`"plot_anat(res.outputs.out_file, title='BET output', cut_coords=(10,10,10),\n",`
`206`	`208`	`" display_mode='ortho', dim=-1, draw_cross=False, annotate=False);"`

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