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Commite0c7152

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fixing handson_analysis - saving output from plot_glass_brain to a png file to avoid issues with size limit
1 parentc8522b3 commite0c7152

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1 file changed

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1 file changed

+10
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‎notebooks/handson_analysis.ipynb

Lines changed: 10 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -998,8 +998,11 @@
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"outputs": [],
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"source": [
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"plot_glass_brain('/output/datasink_handson/normalized/sub-07/wess_0008.nii',\n",
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" output_file=\"/output/datasink_handson/normalized/sub-07/f-contr_activation.png\",\n",
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" colorbar=True, display_mode='lyrz', black_bg=True, threshold=25,\n",
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" title='subject 7 - F-contrast: Activation');"
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" title='subject 7 - F-contrast: Activation');\n",
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"\n",
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"Image(filename='/output/datasink_handson/normalized/sub-07/f-contr_activation.png')"
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]
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},
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{
@@ -1009,8 +1012,11 @@
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"outputs": [],
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"source": [
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"plot_glass_brain('/output/datasink_handson/normalized/sub-07/wess_0009.nii',\n",
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" output_file=\"/output/datasink_handson/normalized/sub-07/f-contr_differences.png\",\n",
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" colorbar=True, display_mode='lyrz', black_bg=True, threshold=25,\n",
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" title='subject 7 - F-contrast: Differences');"
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" title='subject 7 - F-contrast: Differences');\n",
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"\n",
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"Image(filename='/output/datasink_handson/normalized/sub-07/f-contr_differences.png')"
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]
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},
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{
@@ -1648,7 +1654,7 @@
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"metadata": {
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"anaconda-cloud": {},
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"kernelspec": {
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"display_name":"Python[default]",
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"display_name":"Python3",
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"language":"python",
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"name":"python3"
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},
@@ -1662,7 +1668,7 @@
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"name":"python",
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"nbconvert_exporter":"python",
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"pygments_lexer":"ipython3",
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"version":"3.6.5"
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"version":"3.7.8"
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}
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},
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"nbformat":4,

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