Commitda92a08

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ENH: Allow passing in specific nipype branch

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+12

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Lines changed: 12 additions & 2 deletions

Original file line number	Diff line number	Diff line change
`@@ -2,6 +2,16 @@`
`2`	`2`
`3`	`3`	`set -e`
`4`	`4`
	`5`	`+NIPYPE_BRANCH=${1:-"master"}`
	`6`	`+case$NIPYPE_BRANCHin`
	`7`	`+ master)`
	`8`	`+ NIPYPE_URL="https://github.com/nipy/nipype/tarball/master"`
	`9`	`+ ;;`
	`10`	`+*)`
	`11`	`+ NIPYPE_URL="git+https://github.com/nipy/nipype.git@${NIPYPE_BRANCH}"`
	`12`	`+ ;;`
	`13`	`+esac`
	`14`	`+`
`5`	`15`	`# Generate Dockerfile`
`6`	`16`	`generate_docker() {`
`7`	`17`	`docker run --rm kaczmarj/neurodocker:master generate docker \`
`@@ -17,7 +27,7 @@ generate_docker() {`
`17`	`27`	`--miniconda \`
`18`	`28`	`conda_install="python=3.8 pytest jupyter jupyterlab jupyter_contrib_nbextensions`
`19`	`29`	`traits pandas matplotlib scikit-learn scikit-image seaborn nbformat nb_conda" \`
`20`		`- pip_install="https://github.com/nipy/nipype/tarball/master`
	`30`	`+ pip_install="$NIPYPE_URL`
`21`	`31`	`pybids==0.13.1`
`22`	`32`	`nilearn datalad[full] nipy duecredit nbval niflow-nipype1-workflows" \`
`23`	`33`	`create_env="neuro" \`
`@@ -56,7 +66,7 @@ generate_singularity() {`
`56`	`66`	`--miniconda \`
`57`	`67`	`conda_install="python=3.7 pytest jupyter jupyterlab jupyter_contrib_nbextensions`
`58`	`68`	`traits pandas matplotlib scikit-learn scikit-image seaborn nbformat nb_conda" \`
`59`		`- pip_install="https://github.com/nipy/nipype/tarball/master`
	`69`	`+ pip_install="$NIPYPE_URL`
`60`	`70`	`pybids==0.13.1`
`61`	`71`	`nilearn datalad[full] nipy duecredit nbval niflow-nipype1-workflows" \`
`62`	`72`	`create_env="neuro" \`

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