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Commit901ae72

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Merge pull requestmiykael#180 from mgxd/enh/manual-trigger
ENH: Allow GH Action to run with manual trigger
2 parents650ff45 +b574d85 commit901ae72

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2 files changed

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2 files changed

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‎.github/workflows/testing.yml

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@@ -5,6 +5,12 @@ on:
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branches:[ master ]
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pull_request:
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branches:[ master ]
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workflow_dispatch:
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inputs:
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nipype_branch:
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description:'Build specific Nipype branch'
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required:true
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default:'master'
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jobs:
@@ -14,7 +20,10 @@ jobs:
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steps:
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-uses:actions/checkout@v2
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-name:generate the Dockerfile from generate.sh
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run:bash generate.sh
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run:|
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BRANCH=${{ github.event.inputs.nipype_branch }}
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BRANCH=${BRANCH:-"master"}
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bash generate.sh $BRANCH
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# In this step, this action saves a list of existing images,
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# the cache is created without them in the post run.
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# It also restores the cache if it exists.

‎generate.sh

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set -e
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NIPYPE_BRANCH=${1:-"master"}
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case$NIPYPE_BRANCHin
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master)
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NIPYPE_URL="https://github.com/nipy/nipype/tarball/master"
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;;
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*)
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NIPYPE_URL="git+https://github.com/nipy/nipype.git@${NIPYPE_BRANCH}"
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;;
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esac
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# Generate Dockerfile
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generate_docker() {
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docker run --rm kaczmarj/neurodocker:master generate docker \
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--miniconda \
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conda_install="python=3.8 pytest jupyter jupyterlab jupyter_contrib_nbextensions
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traits pandas matplotlib scikit-learn scikit-image seaborn nbformat nb_conda" \
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pip_install="https://github.com/nipy/nipype/tarball/master
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pip_install="$NIPYPE_URL
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pybids==0.13.1
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nilearn datalad[full] nipy duecredit nbval niflow-nipype1-workflows" \
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create_env="neuro" \
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--user=neuro \
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--workdir /home/neuro \
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--miniconda \
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conda_install="python=3.7 pytest jupyter jupyterlab jupyter_contrib_nbextensions
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conda_install="python=3.8 pytest jupyter jupyterlab jupyter_contrib_nbextensions
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traits pandas matplotlib scikit-learn scikit-image seaborn nbformat nb_conda" \
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pip_install="https://github.com/nipy/nipype/tarball/master
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pip_install="$NIPYPE_URL
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pybids==0.13.1
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nilearn datalad[full] nipy duecredit nbval niflow-nipype1-workflows" \
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create_env="neuro" \

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