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Pull requests: nf-core/sarek

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Pull requests list

Investigating potential mutect2 filter bug
#2062 openedNov 27, 2025 bymaxulysseLoading…
11 tasks
Prep 3.7.0 release
#2057 openedNov 19, 2025 byFriederikeHanssen • Draft
11 tasks
fix: sort final vcf in varlociraptor sbwfs and update varlociraptor
#2055 openedNov 14, 2025 byfamosabLoading…
1 of 11 tasks
updatecnvkit to reflect bug fixes blocked
#2051 openedNov 11, 2025 bybounluLoading…
Nft utils tuple match warn
#1986 openedSep 17, 2025 bymaxulysse • Draft
11 tasks
WIP: Fix warning nf core lint and nextflow lint
#1955 openedAug 14, 2025 bymaxulysseLoading…
11 tasks
Add mutect2 force calling using '--alleles' flag
#1952 openedAug 11, 2025 byjchchiuLoading…
8 of 11 tasks
Makelane Column Optional in Samplesheet
#1943 openedJul 21, 2025 byanimeshLoading…
POC: Usage for nf-core/references in nf-core/sarek
#1783 openedJan 27, 2025 bymaxulysseLoading…
11 tasks
Add files via upload - Posters using Sarek
#1773 openedJan 15, 2025 bymlfalco-bioinfoLoading…
11 tasks
feat: Add linting of FASTQ with FQ/LINT
#1763 openedDec 17, 2024 byadamrtalbotLoading…
11 tasks
 3.7
WIP Internal Benchmarking
#1721 openedNov 1, 2024 byfamosab • Draft
11 tasks
Support for PureCN
#1710 openedOct 29, 2024 bylbeltrame • Draft
3 of 14 tasks
Add full test report
#1701 openedOct 28, 2024 byedmundmiller • Draft
11 tasks
FEAT: Auto CHANGELOG GHA
#1688 openedOct 14, 2024 bymaxulysse • Draft
Try to simplify params.tools usage
#1667 openedSep 30, 2024 bymaxulysseLoading…
11 tasks
[DRAFT] Add telseq "a software that estimates telomere length "
#1665 openedSep 26, 2024 bylindenbLoading…
6 of 11 tasks
Add deepsomatic tool
#1647 openedSep 10, 2024 byvaxyzekLoading…
11 tasks
add_dysgu_sarek
#1590 openedJul 11, 2024 bypoddarharsh15Loading…
11 tasks
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