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Update command reference documentation with new features and structure
This commit updates the command reference documentation to align withrecent changes to the Makefile and Docker configuration:- Add environment variables section for easier manual command execution- Update all commands to use APP_DIR instead of APP_DIRECTORY- Add new commands: composer-script, apidocs-generate, apidocs-serve, php-connect, and mailhog- Replace old clean/clean-all commands with env-clean/env-reset- Improve manual alternative commands with better error handling and variable usage- Add examples for commands that accept parameters- Update framework installation instructions with new configuration approach- Add detailed documentation for container shell access- Improve explanations and examples throughoutThis update ensures the documentation remains a valuable reference forusers who cannot use Make and need alternative command-line approaches.1 parentb90e65b commit2e83adc
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